View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19462_low_5 (Length: 461)

Name: NF19462_low_5
Description: NF19462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19462_low_5
NF19462_low_5
[»] chr4 (1 HSPs)
chr4 (5-444)||(46357413-46357853)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Complemental strand, 46357853 - 46357413
Alignment:
Q  5 tcaatacaaatcacattgaatatttccattcttagctcaatctaaattcataacatctgatttgaatttcaattcagcatccattaattaattcatgcca 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46357853 tcaatacaaatcacattaaatatttccattcttagctcaatctaaattcataacatctgatttgaatttcaattcagcatccattaattaattcatgcca 46357754  T
Q  105 tatataaacaaaattagcatttaaatttgatgtttatttacctgagtacgcaagattgattgagaatcaaccctagttttagaaccaacactcttttctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46357753 tatataaacaaaattagcatttaaatttgatgtttatttacctgagtacgcaagattaattgagaatcaaccctagttttagaaccaacactcttttctt 46357654  T
Q  205 -agcttcaccttcaacattgtgttcatcccaattctttcttgccgtcttggccgacccagccaacatatcagaaatcttagaaatccctgctaccatctt 303  Q
     |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46357653 tagcttcaccttcaacattgtgttcatcccaattctttcttgttgtcttggccgacccagccaacatatcagaaatcttagaaatcccagctaccatctt 46357554  T
Q  304 cttcttcgcagtggaatctccaacagccggcgaaaatttgattcccccagacaaccttctcccaggagaaattgaagctcttctaggattgggcgaaggc 403  Q
    |||||| ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  46357553 cttctttgcagtggaatctccaaccgctggcgaaaacttgattcccccggacaaccttctccccggagaaattgaagctcttctaggattcggcgaaggc 46357454  T
Q  404 tgcttccttgctgtcggagaaggctgtctatacctggaggg 444  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  46357453 tgcttccttgccgtcggagagggctgtctatacctggaggg 46357413  T

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