View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_high_13 (Length: 457)
Name: NF19463_high_13
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 44648236 - 44648670
Alignment:
| Q |
8 |
gacatcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagtgaaagcatagagtttagtttctattgagaagttcttctatcatct |
107 |
Q |
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| T |
44648236 |
gacatcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagttaaagcatagagtttagtttctattgagaagttcttctatcatct |
44648335 |
T |
|
| Q |
108 |
gcaaagcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcacnnnnnnncctttctaactcaac |
207 |
Q |
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| T |
44648336 |
gcaaagcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcactttttttcctttctaactcaac |
44648435 |
T |
|
| Q |
208 |
catcataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggt |
307 |
Q |
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| T |
44648436 |
catcataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggt |
44648535 |
T |
|
| Q |
308 |
gaaggaaacttgcaacacttccttaacttcgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggtttgattttcca |
407 |
Q |
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| T |
44648536 |
gaaggaaacttgcaacacttccttaactttgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggtttgattttcca |
44648635 |
T |
|
| Q |
408 |
cattaattggaaagttagtttttgcatttcttcca |
442 |
Q |
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| T |
44648636 |
cattaattggaaagttagtttttgcatttcttcca |
44648670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 2428397 - 2428518
Alignment:
| Q |
203 |
tcaaccatcataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtg |
302 |
Q |
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||||||||||| ||||| | || ||||||||||| ||||| | ||||||||||||||||| |||||||||||| | |||||||| ||||||||||| | |
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| T |
2428397 |
tcaaccatcatgatccagctcgagtccgaacgaggtcctgctcttttctgccacactccaaagtgtgaattctcagtgtcaagccttagacaagtgaggg |
2428496 |
T |
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| Q |
303 |
aaggtgaaggaaacttgcaaca |
324 |
Q |
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|||||||||| |||||||||| |
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| T |
2428497 |
aaggtgaaggtgacttgcaaca |
2428518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 2480354 - 2480418
Alignment:
| Q |
239 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
303 |
Q |
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||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||||||| |
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| T |
2480354 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
2480418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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