View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19463_high_20 (Length: 367)

Name: NF19463_high_20
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19463_high_20
NF19463_high_20
[»] chr2 (4 HSPs)
chr2 (18-330)||(43874140-43874456)
chr2 (18-327)||(43862989-43863297)
chr2 (89-330)||(43866458-43866703)
chr2 (104-339)||(38990057-38990295)
[»] chr4 (2 HSPs)
chr4 (104-350)||(52187782-52188031)
chr4 (224-303)||(36590313-36590392)
[»] chr3 (6 HSPs)
chr3 (104-350)||(777092-777343)
chr3 (153-272)||(1187563-1187682)
chr3 (165-269)||(481988-482092)
chr3 (104-188)||(8032351-8032435)
chr3 (111-182)||(7119797-7119868)
chr3 (228-268)||(477088-477128)
[»] chr5 (2 HSPs)
chr5 (203-271)||(28092132-28092200)
chr5 (109-186)||(7022977-7023054)
[»] chr7 (2 HSPs)
chr7 (103-190)||(32414618-32414705)
chr7 (231-268)||(6890258-6890295)
[»] chr6 (2 HSPs)
chr6 (157-188)||(7139769-7139800)
chr6 (157-188)||(8679372-8679403)
[»] scaffold0438 (1 HSPs)
scaffold0438 (161-193)||(6342-6374)
[»] chr8 (3 HSPs)
chr8 (161-193)||(26291960-26291992)
chr8 (161-193)||(26305217-26305249)
chr8 (161-193)||(26338572-26338604)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 43874456 - 43874140
Alignment:
Q  18 ttaaggtacttcatactgtatcattattgctgctttttattttgtattta---tttatagcatctatnnnnnnn-tatgacttgcaatatcttcctgatt 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||        ||| ||||||||||||  |||||||    
T  43874456 ttaaggtacttcatactgtatcattattgctgatttttattttgtatttactatttatagcatctataaaaaaaatattacttgcaatatcaacctgatt 43874357  T
Q  114 gcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccataccttcatcga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43874356 gcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcaccgaaaattaaagcggccataccttcatcga 43874257  T
Q  214 tacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggtgaaatgtgcattcaacattttaaaa 313  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874256 tacgtgacgaaatggtggactttttgattcaaaactcacccttgacaaaggttgacatcctacgtttataaaggtgaaatgtgcattcaacattttaaaa 43874157  T
Q  314 atagattgtttgattta 330  Q
    |||||||||||||||||    
T  43874156 atagattgtttgattta 43874140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 43863297 - 43862989
Alignment:
Q  18 ttaaggtacttcatactgtatcattattgctgctttttattttgtatttatttatagcatctatnnnnnnntatgacttgcaatatcttcctgattgctt 117  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||||||||    | |||||||       ||||||||||| || ||||||||||||||    
T  43863297 ttaaggtacttcatactgtattattaacgcttctttttattttgtatttat----aacatctatcaaaaaatatgacttgcattaacttcctgattgctt 43863202  T
Q  118 aggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccataccttcatcgatacg 217  Q
    |||||||| |||||||||||  ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43863201 aggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtcactgaaaattaaagtggtcataccttcatcgatacg 43863102  T
Q  218 tgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggtgaaatgtgcattca---acattttaaaaa 314  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||| |    
T  43863101 tgacgaaatggtagactttttgattcaaaactcaccctcgacaaaggttgacatcgtacgtttataaaggtgaaatgtgcattcaacgacattttaaata 43863002  T
Q  315 tagattgtttgat 327  Q
    || ||||||||||    
T  43863001 taaattgtttgat 43862989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 89 - 330
Target Start/End: Complemental strand, 43866703 - 43866458
Alignment:
Q  89 tatgacttgcaatatcttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaa 188  Q
    ||||||||||| || |||||||||||||||||| ||| ||||||||||| |||| |||| ||| ||| ||| |||||||| |||||||||||| ||||||    
T  43866703 tatgacttgcattaacttcctgattgcttaggtgctttccttagttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagtcgctgaaa 43866604  T
Q  189 attaaagcggccataccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggt 288  Q
     | ||| || |||| |||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43866603 ttaaaaacgcccatgccttcatctaaacttgacaaaagagtggactttttgattcaaaactcaccctcgacaaaggttgacatcatacatttataaaggt 43866504  T
Q  289 g-aaatgtgcatt---caacattttaaaaatagattgtttgattta 330  Q
    | |||||||||||   ||||||||||||||||||||||||| ||||    
T  43866503 gaaaatgtgcattcaacaacattttaaaaatagattgtttgcttta 43866458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 339
Target Start/End: Original strand, 38990057 - 38990295
Alignment:
Q  104 cttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccata 203  Q
    |||||||||||||||||||||| | ||| ||| | |||| |||| ||  ||||||| | |||||| |||||||||||| ||||||||  || ||| |  |    
T  38990057 cttcctgattgcttaggttctttctttatttcctgatttattgaaggctgagctccatcccttgtataacttgaagtccctgaaaatagaaacggaccaa 38990156  T
Q  204 ccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggtgaaatgtgcatt--- 300  Q
     || |||| ||| || | ||  | || || |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||  || ||||       
T  38990157 actacatctatatgtaatgatgtggtagaatttttgattcaaaactcaccctcggcaaaggttgacatcatacgtttgtaaaggtaaaccgtacattcga 38990256  T
Q  301 caacattttaaaaatagattgtttgatttagtaatttta 339  Q
    ||||||||||||||||| ||| |||||||| ||||||||    
T  38990257 caacattttaaaaataggttgattgatttaataatttta 38990295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 104 - 350
Target Start/End: Original strand, 52187782 - 52188031
Alignment:
Q  104 cttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccata 203  Q
    |||| ||||||||||||||||| | ||||||| | |||| |||| ||| ||| ||| ||||||||||| |||||||||||||||||| ||| ||| |  |    
T  52187782 cttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttgaagtcactgaaaataaaaacggaccga 52187881  T
Q  204 ccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggtgaaatgtgcatt--- 300  Q
     ||||||| |||  |||||| || ||||  |||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| ||||       
T  52187882 acttcatctatagatgacgacatggtgggatttttgattcaaaactcaccctcggcaaaagttgacatcataggtttataaaggtgaaatgtacattcaa 52187981  T
Q  301 caacattttaaaaatagattgtttgatttagtaattttatttttgtatcc 350  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  52187982 caacattttaaagatagattgattgatttagtaattttacttttgcatcc 52188031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 36590392 - 36590313
Alignment:
Q  224 aatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctacgtttataaaggtgaaatgtgcattcaa 303  Q
    |||||||||||||||||||||||||||||| ||  || | ||||||||| ||  |   | ||||||||||||||||||||    
T  36590392 aatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaaggtgaaatgtgcattcaa 36590313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 350
Target Start/End: Complemental strand, 777343 - 777092
Alignment:
Q  104 cttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccata 203  Q
    |||| ||||||||||||||||| |||| |||| | |||| ||||  || || |||  || ||||||||||||||||||| ||||||| ||| |   | ||    
T  777343 cttcttgattgcttaggttctttccttggttcctgatttattgaacgttgaactctcttacttgtgtaacttgaagtcattgaaaataaaaacataccta 777244  T
Q  204 ccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacatcctac--gtttata-aaggtgaaatgtgcatt 300  Q
     ||||||| |||| ||||| |||  | ||||| ||||||||||||||||| ||| |||||||||| ||| |||  | |  || ||||||||| |||||||    
T  777243 tcttcatcaatacctgacggaatgatagacttattgattcaaaactcaccatcggcaaaggttgatatcttacaagatattataaggtgaaaggtgcatt 777144  T
Q  301 caaca--ttttaaaaatagattgtttgatttagtaattttatttttgtatcc 350  Q
    |||||  ||||||| |||||||||||| ||||||||| ||||||||| ||||    
T  777143 caacaacttttaaagatagattgtttggtttagtaatgttatttttgcatcc 777092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 1187563 - 1187682
Alignment:
Q  153 gagctcctttccttgtgtaacttgaagtcactgaaaattaaagcggccataccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcac 252  Q
    ||||||| |||||| ||||||||||||||  |||| ||  ||||  ||  |||||||||| ||| |  | | || |||||||||||| ||||||||||||    
T  1187563 gagctcccttccttctgtaacttgaagtcgttgaatatagaagccccccgaccttcatcggtacctaccaatatggtggactttttgcttcaaaactcac 1187662  T
Q  253 cctcgacaaaggttgacatc 272  Q
    ||||| |||||||| |||||    
T  1187663 cctcggcaaaggttcacatc 1187682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 481988 - 482092
Alignment:
Q  165 ttgtgtaacttgaagtcactgaaaattaaagcggccataccttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaagg 264  Q
    |||||||||||||||||||||||||| |||| |  |  ||||  |   |||| || ||||| ||||||||||||| ||||||||||||  ||| ||||||    
T  481988 ttgtgtaacttgaagtcactgaaaataaaagtgttccaacctataagcatacctgccgaaacagtggactttttgcttcaaaactcacgatcggcaaagg 482087  T
Q  265 ttgac 269  Q
    |||||    
T  482088 ttgac 482092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 8032435 - 8032351
Alignment:
Q  104 cttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaa 188  Q
    |||| ||||||||||||||||| ||| |  |  | |||| |||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  8032435 cttcatgattgcttaggttctttcctgaaattatgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaa 8032351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 7119797 - 7119868
Alignment:
Q  111 attgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtca 182  Q
    ||||||||||||||  ||||||||| | |||| |||| |||  |||| | ||||||||||||||||||||||    
T  7119797 attgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtca 7119868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 477088 - 477128
Alignment:
Q  228 gtggactttttgattcaaaactcaccctcgacaaaggttga 268  Q
    |||||||||||| ||||||||||||||||  ||||||||||    
T  477088 gtggactttttgcttcaaaactcaccctcagcaaaggttga 477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 28092132 - 28092200
Alignment:
Q  203 accttcatcgatacgtgacgaaatagtggactttttgattcaaaactcaccctcgacaaaggttgacat 271  Q
    ||||||||| |||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28092132 accttcatccatacctgatggaatagtggactttttgattcaaaactcaccctcggcaaaggttgacat 28092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 7022977 - 7023054
Alignment:
Q  109 tgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactga 186  Q
    ||||| ||||||||||| ||||||||| ||| || |||| ||  ||||||| ||||||||||||||||||||||||||    
T  7022977 tgatttcttaggttctttccttagttcctaacttattgatggctgagctcccttccttgtgtaacttgaagtcactga 7023054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 32414618 - 32414705
Alignment:
Q  103 tcttcctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcactgaaaat 190  Q
    |||||||||||| |||||||||| |||| |||| | |||| |||| |||  || | | ||||||||||||||||||||||||||||||    
T  32414618 tcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaat 32414705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 6890258 - 6890295
Alignment:
Q  231 gactttttgattcaaaactcaccctcgacaaaggttga 268  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  6890258 gactttttgcttcaaaactcaccctcaacaaaggttga 6890295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 7139800 - 7139769
Alignment:
Q  157 tcctttccttgtgtaacttgaagtcactgaaa 188  Q
    ||||||||||||||||||||||||||||||||    
T  7139800 tcctttccttgtgtaacttgaagtcactgaaa 7139769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 8679403 - 8679372
Alignment:
Q  157 tcctttccttgtgtaacttgaagtcactgaaa 188  Q
    ||||||||||||||||||||||||||||||||    
T  8679403 tcctttccttgtgtaacttgaagtcactgaaa 8679372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 6342 - 6374
Alignment:
Q  161 ttccttgtgtaacttgaagtcactgaaaattaa 193  Q
    |||||||||||||||||||||||||||| ||||    
T  6342 ttccttgtgtaacttgaagtcactgaaatttaa 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 26291960 - 26291992
Alignment:
Q  161 ttccttgtgtaacttgaagtcactgaaaattaa 193  Q
    |||||||||||||||||||||||||||| ||||    
T  26291960 ttccttgtgtaacttgaagtcactgaaatttaa 26291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 26305217 - 26305249
Alignment:
Q  161 ttccttgtgtaacttgaagtcactgaaaattaa 193  Q
    |||||||||||||||||||||||||||| ||||    
T  26305217 ttccttgtgtaacttgaagtcactgaaatttaa 26305249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 26338572 - 26338604
Alignment:
Q  161 ttccttgtgtaacttgaagtcactgaaaattaa 193  Q
    |||||||||||||||||||||||||||| ||||    
T  26338572 ttccttgtgtaacttgaagtcactgaaatttaa 26338604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University