View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_high_21 (Length: 357)
Name: NF19463_high_21
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 132 - 343
Target Start/End: Complemental strand, 45594993 - 45594786
Alignment:
| Q |
132 |
catattactcattcagagacatgtttacacctcagattatactaataatgattaaaacaatttatttatttgattgatatttggtttgtggtgtgtttgg |
231 |
Q |
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| T |
45594993 |
catattactcattcagagacatgtttacacctcagattatactaat---gattaaaacaatttatttatttgattgatatttggtttgtggtgtgtttgg |
45594897 |
T |
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| Q |
232 |
gtagggttggcttattaaggaagagaaaaggacccattcctggaacaaagggagtggacaggtttcgttcagaagaaacattttatgcaaatcctttacc |
331 |
Q |
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| T |
45594896 |
-tagggttggcttattaaggaagagaaaaggacccattcctggaacaaagggagtggacaggtttcgttcagaagaaacattttatgcaaatcctttacc |
45594798 |
T |
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| Q |
332 |
tgattgtttatg |
343 |
Q |
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|||||||||||| |
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| T |
45594797 |
tgattgtttatg |
45594786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 45595192 - 45595072
Alignment:
| Q |
16 |
tgaatgatctccacaaaggaaggtatgtaattggaaaaaatagaaaaacattaatgtaaatgtcaagtagtttaataataagttggataaatatgtttta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45595192 |
tgaatgatctccacaaaggaaggtatgtaattggaaaaaatagaaaaacattaatgtaaatgtcaagtagtttaataat-agttggataaatatgtttta |
45595094 |
T |
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| Q |
116 |
tatacatatcgtatatcatatt |
137 |
Q |
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| T |
45595093 |
tatacatatcgtatatcatatt |
45595072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 27148054 - 27147960
Alignment:
| Q |
249 |
aggaagagaaaaggacccattcctggaacaaagggagtggacaggtttcgttcagaagaaacattttatgcaaatcctttacctgattgtttatg |
343 |
Q |
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| T |
27148054 |
aggaaaagaaaaggaccaatttctggaacaaagggcatggacaggtttcgctcagaagaaaccttttatgctaatcccttacctgattgtttatg |
27147960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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