View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_high_23 (Length: 320)
Name: NF19463_high_23
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 8825413 - 8825611
Alignment:
| Q |
106 |
agaagtgcaacaccaaagaagttaatcccggttcatttatgctatttggtaagatgatacatttacatcctgttgaaagtaatttgcatgattctgctac |
205 |
Q |
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| T |
8825413 |
agaagtgcaacaccaaagaagttaatcccggttcatttattctatttggtaagatgatacatttacatcctgttgaaagtaatttgcatgattctgctac |
8825512 |
T |
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| Q |
206 |
caagggagaagatggttgtatgggctgcaataattgaaggcattcatagaatttgctgcacataaataactcagcaagctatgcgaaaatagttatgta |
304 |
Q |
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| T |
8825513 |
caagggagaagatggttgtatgggctgcaataattgaaggcattcatagaatttgctgcacataaataactcagcaagctatgcgaaaatagttatgta |
8825611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 8825233 - 8825324
Alignment:
| Q |
16 |
ccacagcaactactaccaactttttgaatgttaaggccaatgatttaattgagaaaaattcaatggcaaggttggatattgtgtcaattgag |
107 |
Q |
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| T |
8825233 |
ccacagcaactactaccaactttttgaatgttaaggccaatgatttaattgagaaaaattcaatggcaaggttggatattgtgtcaattgag |
8825324 |
T |
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