View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_high_26 (Length: 271)
Name: NF19463_high_26
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_high_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 246478 - 246734
Alignment:
| Q |
15 |
tttttgaccttcttggttttggtctgccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaaga |
114 |
Q |
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| T |
246478 |
tttttgaccttcttggttttggtctgccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaaga |
246577 |
T |
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| Q |
115 |
aaataagaaaacccattaaagttagctcctttggaacccgatttcaaagacccagattgtataattctggaactaagcttaaaaattgaatttttatgtg |
214 |
Q |
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| T |
246578 |
aaataagaaaacccattaaagttagctcctttggaacccgatttcaaagacccagattgtataattctggaactaagcttaaaaattgaatttttatgtg |
246677 |
T |
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| Q |
215 |
aaacccaggaagccaaggtatggaaactttcaagaacaagttttccccttttatacc |
271 |
Q |
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| T |
246678 |
aaaccctggaagccaaggtatggaaactttcaagaacaagttttccccttttatacc |
246734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 21960809 - 21960922
Alignment:
| Q |
92 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaagttagctcctttggaacccgatttcaaagacccagattgtataattctggaactaa |
190 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||| |||| | |||||| ||||||| || | |||||| |||||| |
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| T |
21960809 |
cctaatctcttagaaattgaagaaaatgaagaaaacccattaaagctagcacctttgttacccaaattcaaatacccagactgcaaaattctcgaactag |
21960908 |
T |
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| Q |
191 |
gcttaaaaattgaa |
204 |
Q |
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| T |
21960909 |
gttgaaaaattgaa |
21960922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 903958 - 903896
Alignment:
| Q |
92 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaagttagctcctttggaaccc |
153 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||||| |||| ||||||||||| |
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| T |
903958 |
cctaatctcttagaaattgaagaaaatgaagaaaacacattaaagctagcatctttggaaccc |
903896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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