View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_1 (Length: 782)
Name: NF19463_low_1
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_1 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 24 - 764
Target Start/End: Original strand, 10513586 - 10514326
Alignment:
| Q |
24 |
ggagcttccattgattgttgtggatgtattcattaacagtagatttgaggagaggcctagtagcttcgggaatgttgagaagatccgcaagagattggcc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10513586 |
ggagcttccattgattgttgtggatgtattcattaacaatagattttaggagaggtctagtagcttcgggaatgttgagaagattcgcaagagattggcc |
10513685 |
T |
|
| Q |
124 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatactgctccaa |
223 |
Q |
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| T |
10513686 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatattgctccat |
10513785 |
T |
|
| Q |
224 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatctttcaaaagagctgcacaaggtttctgagagttgatcaaattccagc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
10513786 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatccttcaaaagagttgcccaaggtttctgagagttgatcaaattccagc |
10513885 |
T |
|
| Q |
324 |
aaagcttcaagttggtagcttgattcaaacttatgaaggatcttaagtttaaaccaccctgcttccaatgtctacacaccttcttccaagagactgaaat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10513886 |
aaagcttcaagttggtagcttgattcaaacttatgagggatcttaagtttaaaccaccctgcttccaatgtctacacaccttcttccaagagactgaaat |
10513985 |
T |
|
| Q |
424 |
taatttccttttgtctttgtctccactccaaataaaattcctaatctctttttcaagatctttgagaagagaaacaggccagacataaatagagatgcta |
523 |
Q |
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| T |
10513986 |
taatttccttttgtctttgtctccactctagatgaaattcctaatctctttttcaagatctttgagaagagaaataggccaggcataaatagagatacta |
10514085 |
T |
|
| Q |
524 |
taggttagcatactatgaataacagattgcaccaactggactctacctgccatagataacaaacttgccttccaatttgaaagtttaagtttgattctat |
623 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10514086 |
taggttagcatactatgaataacaaattgcaccaactggactctacctgccatagataacaaacttgccttccaatttgaaagtttaagtttgattctat |
10514185 |
T |
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| Q |
624 |
ctgcaatttgaaagtttaactcatggtgacttaggtacaaagttcatgatgatcaaacatactcatcaaacttttagatttctcaaaaaatcacttatca |
723 |
Q |
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| T |
10514186 |
ctgcaatttgaaagtttaactcatggtgacttaggtacaaagttcacgatgatcaaacatactcatcaaacttttagatttctcaaaaaatcacttatca |
10514285 |
T |
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| Q |
724 |
gatcaaattctaaatgtttactggactttactatacatatg |
764 |
Q |
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| T |
10514286 |
gatcaaattctaaatgtttattgtactttactatacatatg |
10514326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 377 - 631
Target Start/End: Original strand, 1 - 255
Alignment:
| Q |
377 |
ccaccctgcttccaatgtctacacaccttcttccaagagactgaaattaatttccttttgtctttgtctccactccaaataaaattcctaatctcttttt |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| | |
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| T |
1 |
ccaccctgcttccaatgtctacacaccttcttccaagagactgaaattaatttccttttgtctttgtctctactccagatgaaattcctaatctctttct |
100 |
T |
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| Q |
477 |
caagatctttgagaagagaaacaggccagacataaatagagatgctataggttagcatactatgaataacagattgcaccaactggactctacctgccat |
576 |
Q |
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| T |
101 |
caagatctttgagaagagaaataggccaggcataaatagagatgctataggttaacatactatgaataacagattgcaccaactggactctacctgccat |
200 |
T |
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| Q |
577 |
agataacaaacttgccttccaatttgaaagtttaagtttgattctatctgcaatt |
631 |
Q |
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| T |
201 |
agataacaaacttgccttccaatttgaaagtttaagtttgattctatctgcaatt |
255 |
T |
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