View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_10 (Length: 481)
Name: NF19463_low_10
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 34755674 - 34756114
Alignment:
| Q |
18 |
atggaatagggtagaaaggttgtcaaggaatagtgaggtgcaagtgaaccaggcttggtatgtgatcagatatggaacaataatttataattgttcagca |
117 |
Q |
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| T |
34755674 |
atggaatagggtagaaaggttgtcaaggaatagtgaggtgcaagtgaaccaggcttggtatgtgaccaggtaaggaacaataatttataattgttcagca |
34755773 |
T |
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| Q |
118 |
gtgaacgacaattaattaccgtttagtagcaaacggtaattaattgttgcttggggtcattttggtaaatttaaggtgcttgagtgcagcccatggttgc |
217 |
Q |
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| T |
34755774 |
gtgaacgacaattaattaccgtttaatagtaaacggtaattaattgctgcttggggtcattttggtaaatttagggtacttgagtgtaacccatggttgc |
34755873 |
T |
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| Q |
218 |
ctaaagaacaannnnnnnaccctaattttatgtgggaaactgtaccatgtatccctacatttataccttcacctcgatgaatcattgaaaaatccagttt |
317 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||| |||| || |||||||||| ||||| |
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| T |
34755874 |
ctaaagaacaattttcttaccctaattttatatgggaaactgtaccatgtacccctatatttatacctttaccccgataaactattgaaaaatttagttt |
34755973 |
T |
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| Q |
318 |
tgtctctgctgtcacttgactttactatggatattgcatattcataaactttgaatgggtatatgcaaattcataaactttagaattggaggctttttgt |
417 |
Q |
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||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
34755974 |
tgtctctgctgtcacttgacttt-ccatgaatattgcatattcataaacttagaatgggtatctgcaaattcataaa-tttagaattggaggttttttgt |
34756071 |
T |
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| Q |
418 |
tttcttccgctatctgttcgtggtgacctccgattttggtcta |
460 |
Q |
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| T |
34756072 |
tttcttccgctatctgctcgtggtgacctccgattttggtcta |
34756114 |
T |
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