View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_12 (Length: 472)
Name: NF19463_low_12
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 18273675 - 18274146
Alignment:
| Q |
1 |
tcattttgttgcagttaacagatgtttttctgaagggccactcgaactcacagatccagttaattggcataaaaatgacttctgttttgcaacatgtcca |
100 |
Q |
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| T |
18273675 |
tcattttgttgcagttaacagatgtttttctgaagggccactcgaactcacagatccagttaattggcctaaaaatgacttctgttttgcaacatgtcaa |
18273774 |
T |
|
| Q |
101 |
agtgccggatcctcatcaaagcgctttgaattattcgtcagtctctgtagatttggctccgtagctttgacataatctgaaatcagggaaactaatacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18273775 |
agtgccggatcctcatcaaagcgctttgaattattcgtcagtctctgtagatttggctccgtagctttgacataatctgaaatcagagaaactaatacag |
18273874 |
T |
|
| Q |
201 |
tagtaacagtggcattacaaatatttctaggcca-------nnnnnnnngctacaatgcctcaacttgaaagaggattttatttttgcttttgacatatg |
293 |
Q |
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| T |
18273875 |
tagtaacagtggcattacaaatatttctaggccagtggaacttttttttgctacaatgcctcaacttgaaagaggattttatttttgctttcgacatatg |
18273974 |
T |
|
| Q |
294 |
atagtgaagtttatatgtctggaacagtgacagaagtttccnnnnnnngcaagcattttataaggtcatcaaacccaacacaccaacctgac-------- |
385 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
18273975 |
atagtgaag-ttatatgtctgtaacagtgacagaagtttcctttttttgcaagcatttatcaaggtcatcaaacctaacataccaacctgactttttact |
18274073 |
T |
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| Q |
386 |
tttttacttatatcttgagaaagaccattacatttatgtgtccaaatattattacttggtggtgagttttcat |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18274074 |
tttttacttatatcttgagaaagaccattacatttatgtgtccaaatattattacttggtggtgagttttcat |
18274146 |
T |
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