View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_13 (Length: 468)
Name: NF19463_low_13
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 82 - 424
Target Start/End: Original strand, 39087687 - 39088032
Alignment:
| Q |
82 |
ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaatnnnnnnngtgcatacggcaggtaca |
181 |
Q |
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| T |
39087687 |
ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaataaaaaa-gtgcatacggcaggtaca |
39087785 |
T |
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| Q |
182 |
ttccatcgatcggttgttaattttttgttaatcaccaacttaattttactgatatctcaacagcaaagtaagttgcttcattttgttactaaaaaagaaa |
281 |
Q |
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| T |
39087786 |
ttccatcgatcggttgttaattttttgttaatcaccaacttaattttactgatatctcaacagcaaagtaagttgcttcattttgttactaaaaaagaaa |
39087885 |
T |
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| Q |
282 |
ttatataatgtaaaatcaaatcatcaaaaagggtccactaatagctaactc----tatccattattacaacttaacaatatcgaacagtggctttagaaa |
377 |
Q |
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| T |
39087886 |
ttatataatgtaaaatcaaatcaccaaaaagggtccactaatagctaactctatatatccattattacaacttaacaacatcgaacagtggctttagaaa |
39087985 |
T |
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| Q |
378 |
catcatgccacacctatataaattgttccatccattccataacttgt |
424 |
Q |
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| T |
39087986 |
catcatgccacacctatataaattgttccatccattccataacttgt |
39088032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 39087612 - 39087661
Alignment:
| Q |
16 |
atcagcttgtgatgaagtgttggttcaaagtaaaaatctaatatgatagaa |
66 |
Q |
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| T |
39087612 |
atcagcttgcgatgaagtgttg-ttcaaagtaaaaatctaatatgatagaa |
39087661 |
T |
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