View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_15 (Length: 432)
Name: NF19463_low_15
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 427
Target Start/End: Complemental strand, 35286821 - 35286628
Alignment:
| Q |
234 |
ttcattgaaagtcttatttataacctgtccagttgcaggaataacccctttatagactcttccaaagcctccttcgctaagtagacactcctgtcggaaa |
333 |
Q |
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| T |
35286821 |
ttcattgaaagccttatttataacctgtccagttgcaggaataacccctttatagactcttccaaagcctccttcgctaagtagacactcctgtcggaaa |
35286722 |
T |
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| Q |
334 |
ttctttgttgctgttgctagctcacggaaagtgaaattttgtgcattaatgtttgtcggatctccttgcatttgctcatctgccctttgcttct |
427 |
Q |
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| T |
35286721 |
ttctttgttgctgttgctagctcacggaaagtgaaattttgtgcattaatgtttgtcggatctccttgcatttgctcatctgccctttgtttct |
35286628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 35287035 - 35286859
Alignment:
| Q |
20 |
caaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggtgaacatggctcagaagagaaacttcagtcagaaattccttg |
119 |
Q |
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| T |
35287035 |
caaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggtgaacatggctcagaagagaaacttcagtcagaaattccttg |
35286936 |
T |
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| Q |
120 |
ctgttttcggtcccatgtcgatcgagttgcttcacggctacaacctgaataatggttgcaaataaaacaatgaggag |
196 |
Q |
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| T |
35286935 |
ctgttttcggtcccatgtcgatcgagttgcttcacggctacaacctgaataatggttgcaaataaaacaatgaggag |
35286859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 48173288 - 48173346
Alignment:
| Q |
20 |
caaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggt |
78 |
Q |
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| T |
48173288 |
caaaagacgttgatcgccatcagcacaataaccagtgagtttgacaagattttcatggt |
48173346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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