View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_16 (Length: 425)
Name: NF19463_low_16
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 247137 - 246726
Alignment:
| Q |
12 |
attattcttatcaattgaactaaggtcacgaatacagagatgatacaaattgcttaactttattttttaatttagttattcgagaacgaacttttgattg |
111 |
Q |
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| T |
247137 |
attattctcatcaattgaactaaggtcacgaatacagagatgatacaaattgcttaactttattttttaatttagttattcgagaacgaacttttgattg |
247038 |
T |
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| Q |
112 |
ggttaaaaaagcctatatctttatcaattagatcaatccattaatgttggtacttttaaaaacattcatttccaataactcatttaacacttcgtatttt |
211 |
Q |
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| T |
247037 |
ggttaaaaaagcctatatctttatcaattagatcaatccattagtgttggtacttttaaaaacattcatttccaataactcattcaacacttcgtatttt |
246938 |
T |
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| Q |
212 |
ttgttatatctttcttggtatgacattgttatatctccatctctcttttatggtgtagaatgtagattaatggttatagtgtctacaaatcttttccatt |
311 |
Q |
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| T |
246937 |
ttgttatatctttcttggtatgacattgttatatctccatctctc--ttatggtgtagaatgtagattaatggttttagtgtctacaaatcttttccatt |
246840 |
T |
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| Q |
312 |
tctaaatgcatacaaattaacactcacagtgtttcactttataaatcaatctttcaacctagtttannnnnnnggggttttacgtgggttttactatcat |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
246839 |
tctaaattcatacaaattaacactcacagtgtttcactttataaatcaatctttcaacctagtttatttttttggggttttacgtgggttttactatcat |
246740 |
T |
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| Q |
412 |
gtgatggtataaaa |
425 |
Q |
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| T |
246739 |
gtgatggtataaaa |
246726 |
T |
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