View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_17 (Length: 411)
Name: NF19463_low_17
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 1534273 - 1534669
Alignment:
| Q |
1 |
gataacgacagaacatatacgtcaaggacaacagtgtagataactatgatccttgtacaggatatacaaagttaaaagatcagttttagtgttcttcaac |
100 |
Q |
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| T |
1534273 |
gataacgacagaacatatacgtcaaggacaacagtgtagataactatgatccttgtacaggatatacaaagttaaaagatcagttttagtgttcttcaac |
1534372 |
T |
|
| Q |
101 |
caacggaatggatgtttttcctcacaattttatcatctcatatatccactgttataggtttgtaacatatttcaaacacttaaaatcgcaaatgaaagca |
200 |
Q |
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| T |
1534373 |
caacggaatggatgtttttcctcacaattttatcatctcatatatccactgttataggtttgtaacatatttcaaacacttaaaatcgcaaatgaaagca |
1534472 |
T |
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| Q |
201 |
gtaatataacatattataggaatcagataattttgattattgagcagaagaaattgaagctcatggaagtaaaagaagcaatggaagattaaaaatatca |
300 |
Q |
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| T |
1534473 |
gtaatataacatattataggaatcagataattttgattattgagcagaagaaattgaagctcatggaagtaaaagaagcaatggaagattaaaaatatca |
1534572 |
T |
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| Q |
301 |
tagttcataccttccttgcctccttctcaatagcatctttgtgtctgtccttgtcagatccctgaggagaaaattgaaaattggaaaatgtaaatac |
397 |
Q |
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| T |
1534573 |
tagttcataccttccttgcctccttctcaatagcatctttgtgtctgcccttgtcagatccctgaggagaaaattgaaaattggaaaatgtaaatac |
1534669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 1139497 - 1139309
Alignment:
| Q |
15 |
atatacgtcaaggacaa--cagtgtagataactatgatccttgtacaggatatacaaagttaaaagatcagttttagtgttcttcaaccaacggaatgga |
112 |
Q |
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| T |
1139497 |
atatatgtcaaggacaatacaatgcagataactatgatctttgtacaggatata-aaagttaaaagatcagttttagagttcttcaacgaacggaatgga |
1139399 |
T |
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| Q |
113 |
tgtttttcctcacaattttatcatctcatatatccactgttataggtttgtaacatatttcaaacacttaaaatcgcaaatgaaagcagtaatataacat |
212 |
Q |
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| T |
1139398 |
tgtttatccttgc-attatatcatctcatatatccactat----------taacatatttcaaacacttaaaatcacaaatgaaaacggtaatataacat |
1139310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 1139312 - 1139211
Alignment:
| Q |
299 |
catagttcataccttccttgcct---ccttctcaatagcatctttgtgtctgtccttgtcagatccctgaggagaaaattgaaaattggaaaatgtaaat |
395 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139312 |
catagttcataccttccttgccttctccttctcaatagcatctttgcgcctgtccttgtcagatccctgaggagaaaattgaaaattggaaaatgtaaat |
1139213 |
T |
|
| Q |
396 |
ac |
397 |
Q |
| |
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|| |
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|
| T |
1139212 |
ac |
1139211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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