View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_18 (Length: 411)
Name: NF19463_low_18
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 6283845 - 6284231
Alignment:
| Q |
8 |
gagcagagaaggataggtttttccaataacacctccattgattatagatagaggaagggggtactatagttccagaaacacctggaggaaatgtggaggg |
107 |
Q |
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| T |
6283845 |
gagcagagaaggataggtttttccaataacaccgccattaattatagatagaggaagggggtacgatagttctggaaacacctggaggaaatgtggaggg |
6283944 |
T |
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| Q |
108 |
agagtatgtaggaaatagttggatgcggtagggatttttcgttgacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
207 |
Q |
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| T |
6283945 |
agagtaggtaggaaatagttggatgcagtagggatttttcgcttacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
6284044 |
T |
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| Q |
208 |
cggtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttgggg |
307 |
Q |
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| T |
6284045 |
cggtagaacttgaagaagttgatgagttgaataaaggaagaaaggagaaagcaagcagtggtcaatgattgtattgatttataatgtgagaagcttgggg |
6284144 |
T |
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| Q |
308 |
aagatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggttgatatctttcgtgtgggagggttttttcggggtgtgct |
394 |
Q |
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| T |
6284145 |
aagatcgaaaaggaaaatgattaactagttggtgcgccaacaaaaggttgatatctttcgcgtgggagggttttgtcggggtgtgct |
6284231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 6305577 - 6305719
Alignment:
| Q |
210 |
gtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttggggaa |
309 |
Q |
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| T |
6305577 |
gtagaacatgaagaagcagatgtgttgaataaaggaagaagggagaaagcaactagtgatcaatgattgtgttgatttataa--tgagaggcttggag-a |
6305673 |
T |
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| Q |
310 |
gatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggt |
355 |
Q |
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| T |
6305674 |
gatcgaaaaggaaaatgattaactagttggtgcgccaaaaaaaggt |
6305719 |
T |
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