View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19463_low_2 (Length: 649)

Name: NF19463_low_2
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19463_low_2
NF19463_low_2
[»] chr3 (19 HSPs)
chr3 (289-632)||(27230447-27230789)
chr3 (16-325)||(38257037-38257344)
chr3 (344-403)||(47770331-47770390)
chr3 (285-397)||(50729536-50729651)
chr3 (285-397)||(50783198-50783313)
chr3 (589-632)||(27223255-27223298)
chr3 (283-411)||(40756726-40756858)
chr3 (286-411)||(1778849-1778977)
chr3 (285-325)||(475282-475321)
chr3 (285-317)||(2590811-2590843)
chr3 (285-325)||(3112996-3113036)
chr3 (285-325)||(7824455-7824495)
chr3 (285-325)||(29689483-29689523)
chr3 (285-325)||(42392806-42392846)
chr3 (285-325)||(43247651-43247691)
chr3 (285-317)||(43775318-43775350)
chr3 (285-325)||(51665926-51665966)
chr3 (285-325)||(54158353-54158393)
chr3 (285-325)||(55320401-55320441)
[»] chr7 (21 HSPs)
chr7 (285-409)||(27915581-27915709)
chr7 (285-409)||(7162791-7162916)
chr7 (285-332)||(42081620-42081667)
chr7 (285-333)||(48444153-48444203)
chr7 (285-323)||(32606331-32606369)
chr7 (285-325)||(8439165-8439205)
chr7 (285-325)||(11355910-11355950)
chr7 (287-409)||(15634882-15635007)
chr7 (283-317)||(43753752-43753786)
chr7 (287-332)||(23036208-23036253)
chr7 (285-325)||(4106825-4106865)
chr7 (285-325)||(4107396-4107436)
chr7 (285-409)||(5772820-5772947)
chr7 (285-325)||(19630669-19630709)
chr7 (285-325)||(23358272-23358312)
chr7 (285-325)||(25546276-25546316)
chr7 (345-409)||(28110995-28111059)
chr7 (285-325)||(31770533-31770573)
chr7 (285-325)||(38781209-38781249)
chr7 (285-325)||(47250252-47250292)
chr7 (285-325)||(47570719-47570759)
[»] chr4 (20 HSPs)
chr4 (288-409)||(23710337-23710461)
chr4 (285-397)||(12867853-12867968)
chr4 (285-409)||(1173951-1174078)
chr4 (285-325)||(16555394-16555434)
chr4 (287-325)||(23532134-23532172)
chr4 (285-409)||(31014982-31015109)
chr4 (351-409)||(32441154-32441212)
chr4 (285-409)||(51287601-51287729)
chr4 (285-326)||(37620703-37620744)
chr4 (285-410)||(45874054-45874182)
chr4 (285-325)||(1966637-1966677)
chr4 (285-325)||(12735518-12735558)
chr4 (285-325)||(23417484-23417524)
chr4 (285-325)||(26424859-26424899)
chr4 (285-325)||(28798389-28798429)
chr4 (285-325)||(34739367-34739407)
chr4 (352-408)||(41679375-41679431)
chr4 (285-325)||(43139907-43139947)
chr4 (285-325)||(50347330-50347370)
chr4 (285-325)||(53457911-53457951)
[»] chr5 (14 HSPs)
chr5 (285-409)||(2970984-2971111)
chr5 (283-325)||(3386892-3386934)
chr5 (285-411)||(21112047-21112176)
chr5 (287-409)||(40177624-40177749)
chr5 (285-409)||(13203957-13204084)
chr5 (348-410)||(9577028-9577090)
chr5 (285-325)||(12257443-12257483)
chr5 (285-317)||(17465172-17465204)
chr5 (285-325)||(21018310-21018350)
chr5 (285-325)||(23262631-23262671)
chr5 (285-325)||(29265962-29266002)
chr5 (285-325)||(31909386-31909426)
chr5 (285-325)||(32143415-32143455)
chr5 (285-325)||(35317698-35317738)
[»] chr1 (23 HSPs)
chr1 (285-409)||(45813012-45813139)
chr1 (285-323)||(4066050-4066088)
chr1 (284-325)||(35945884-35945925)
chr1 (285-325)||(778661-778701)
chr1 (285-409)||(9886893-9887020)
chr1 (285-325)||(13109857-13109897)
chr1 (287-323)||(13183179-13183215)
chr1 (353-409)||(39284290-39284346)
chr1 (287-410)||(2088908-2089034)
chr1 (285-376)||(7059500-7059594)
chr1 (348-398)||(47111468-47111518)
chr1 (285-323)||(49783796-49783834)
chr1 (285-374)||(13097339-13097431)
chr1 (285-326)||(26032887-26032928)
chr1 (285-325)||(4062938-4062978)
chr1 (285-325)||(5055789-5055829)
chr1 (285-325)||(28455961-28456001)
chr1 (285-325)||(29994384-29994424)
chr1 (285-325)||(32007161-32007201)
chr1 (285-409)||(32982351-32982478)
chr1 (285-325)||(41039304-41039344)
chr1 (285-325)||(41808289-41808329)
chr1 (285-325)||(48660109-48660149)
[»] chr6 (10 HSPs)
chr6 (285-325)||(19145557-19145597)
chr6 (285-325)||(21037377-21037417)
chr6 (285-332)||(16518501-16518548)
chr6 (285-406)||(5598776-5598900)
chr6 (285-325)||(4464214-4464254)
chr6 (287-323)||(7014313-7014349)
chr6 (285-325)||(24619080-24619120)
chr6 (285-325)||(29009651-29009691)
chr6 (285-325)||(33621581-33621621)
chr6 (285-325)||(35218641-35218681)
[»] chr8 (20 HSPs)
chr8 (285-332)||(10963243-10963290)
chr8 (285-409)||(9292018-9292145)
chr8 (285-409)||(28817256-28817383)
chr8 (285-325)||(29425438-29425478)
chr8 (285-325)||(31969721-31969761)
chr8 (285-411)||(6602519-6602648)
chr8 (285-411)||(6677972-6678101)
chr8 (287-325)||(31532128-31532166)
chr8 (285-410)||(1078649-1078777)
chr8 (284-325)||(40911307-40911348)
chr8 (285-326)||(45264641-45264682)
chr8 (285-325)||(1341-1381)
chr8 (285-325)||(70524-70564)
chr8 (285-325)||(3822483-3822523)
chr8 (285-325)||(4530983-4531023)
chr8 (285-325)||(32333201-32333241)
chr8 (285-325)||(35779498-35779538)
chr8 (285-317)||(39303405-39303437)
chr8 (285-325)||(42192640-42192680)
chr8 (285-325)||(42885261-42885301)
[»] chr2 (17 HSPs)
chr2 (364-409)||(10772076-10772121)
chr2 (285-410)||(26605623-26605751)
chr2 (285-410)||(27137919-27138046)
chr2 (285-403)||(11816551-11816673)
chr2 (285-332)||(13106445-13106492)
chr2 (285-332)||(21312283-21312330)
chr2 (287-325)||(4800963-4801001)
chr2 (285-325)||(10639607-10639647)
chr2 (285-325)||(23839946-23839986)
chr2 (285-325)||(29659219-29659259)
chr2 (285-325)||(33083555-33083595)
chr2 (285-325)||(34460456-34460496)
chr2 (285-325)||(37197611-37197651)
chr2 (285-325)||(38440198-38440238)
chr2 (285-325)||(39831445-39831485)
chr2 (285-325)||(42578255-42578295)
chr2 (285-325)||(45125166-45125206)
[»] scaffold0352 (1 HSPs)
scaffold0352 (285-325)||(8944-8984)
[»] scaffold0032 (1 HSPs)
scaffold0032 (285-409)||(56481-56608)
[»] scaffold0053 (1 HSPs)
scaffold0053 (285-324)||(22251-22290)
[»] scaffold0360 (1 HSPs)
scaffold0360 (284-325)||(14592-14633)
[»] scaffold1348 (1 HSPs)
scaffold1348 (285-325)||(863-903)
[»] scaffold0119 (2 HSPs)
scaffold0119 (285-325)||(13952-13992)
scaffold0119 (285-325)||(19632-19672)
[»] scaffold0067 (1 HSPs)
scaffold0067 (285-317)||(34914-34946)
[»] scaffold0044 (1 HSPs)
scaffold0044 (285-325)||(9974-10014)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 289 - 632
Target Start/End: Complemental strand, 27230789 - 27230447
Alignment:
Q  289 agatgaagtggtaattcactgaaattaaattcacaca--actgtgaatctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaacatttat 386  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  27230789 agatgaagtggtaattcactgaaattaaattcacacacaactgtgaatcccgagtttgaatccaggtcacgatgtctggccttgcaatttcagcatttat 27230690  T
Q  387 cagttgagctatgacttttagacgaagtgaggtatttatttcaagaaagaaagatgatgtttgtataatcttctcttcagtggaatacactactttttat 486  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||     
T  27230689 cagttgagctattacttttagatgaagtgaggtatttatttcaagaaagaaagatgatgtttgtataatcttctcttcaatggaatacaccactttttac 27230590  T
Q  487 ccacagtttcgtaataatagaaaacttttgaaatgtacttgtacttttacatgttttacacataaaagtagttagtgttgtatggtaagtaccaatcaaa 586  Q
    |||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  27230589 ccacagtttcg---tgatagaaaacttttgaaatgtacttgtacttttacatgttttacacataaaagtagttagtgttgtatgataagtaccaatgaaa 27230493  T
Q  587 tgtaaatgtaagttttcttttaaagtgtagtgaacatgaaactttt 632  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27230492 tgtaaatgtaagttttcttttaaagtgcagtgaacatgaaactttt 27230447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 38257037 - 38257344
Alignment:
Q  16 cagtttccactcaaccttattttataatgactgtatctcatttggctctctactttggtcttcgaggatttattttttgtctctgattgcaagaaaatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38257037 cagtttccactcaaccttattttataatgactgtatctcatttggctctctactttggtcttcgaggatttatttt-tgtctctgattgcaagaaaatct 38257135  T
Q  116 tgctctatctcatttttgaatgagttgtatgaatatctttggtcactcgattacttttacaatgactgtatctccatttttagcaacnnnnnnnnnnaac 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  38257136 tgctctatctcattttttaatgagttgtatgaatatctttggtcactcgattacttttacaatgactgtatctccatttttagcaac-tttttttttaac 38257234  T
Q  216 agctcatttttagcaccattaatattgcttatccagaagtaagtattcttttgttactcnnnnnnnatatcttagatgaagtggtaattcactgaaatta 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||| | |||||||||    
T  38257235 agctcatttttagcaccattaatattgcttatcaagaagtaagtattcttttgttactctttttttatatcttagatgaagtggtaatccgctgaaatta 38257334  T
Q  316 aattcacaca 325  Q
    || |||||||    
T  38257335 aactcacaca 38257344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 47770390 - 47770331
Alignment:
Q  344 gaatccaggtcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgactt 403  Q
    ||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| |||||    
T  47770390 gaatccaggtcacgacgtccgagcttgcaatttcgacatttatcagttgagctaggactt 47770331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 50729651 - 50729536
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaa--ctgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    |||||||||||||||||||  | |||||||||| ||||| ||  ||| ||  ||||| ||| |||||||| |||||| |||||||||| |||||||  ||    
T  50729651 tcttagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggca 50729552  T
Q  382 tttatcagttgagcta 397  Q
    ||| ||||||||||||    
T  50729551 tttgtcagttgagcta 50729536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 50783198 - 50783313
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaa--ctgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    |||||||||||||||||||  | |||||||||| ||||| ||  ||| ||  ||||| ||| |||||||| |||||| |||||||||| |||||||  ||    
T  50783198 tcttagatgaagtggtaatctattgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggca 50783297  T
Q  382 tttatcagttgagcta 397  Q
    ||| ||||||||||||    
T  50783298 tttgtcagttgagcta 50783313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 632
Target Start/End: Complemental strand, 27223298 - 27223255
Alignment:
Q  589 taaatgtaagttttcttttaaagtgtagtgaacatgaaactttt 632  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  27223298 taaatgtaagttttctttcaaagtgtagtgaacatgagactttt 27223255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 411
Target Start/End: Original strand, 40756726 - 40756858
Alignment:
Q  283 tatcttagatgaagtggtaattcactgaaattaaattcacac--aactgtgaa-tctcaagtttgaatccaggtcacgat-gtctgaccttgcaatttca 378  Q
    ||||||||||||||||||||   |||||||||||| ||||||  ||||||||  ||||  ||| |||||| | ||| ||| |||||||||||||||||      
T  40756726 tatcttagatgaagtggtaaactactgaaattaaactcacacgcaactgtgaggtctcgggttcgaatccggatcatgatcgtctgaccttgcaattttg 40756825  T
Q  379 acatttatcagttgagctatgacttttagacga 411  Q
     ||||| ||||||||| || ||||| |||||||    
T  40756826 gcatttttcagttgagttaggacttctagacga 40756858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 1778977 - 1778849
Alignment:
Q  286 cttagatgaagtggtaattcactgaaattaaattca--cacaactgtgaatctcaagttt-gaatccaggtcacgatgtctgaccttgcaatttcaacat 382  Q
    |||||||||||||||||| || ||||| ||||||||  ||||| |||||   ||  | || ||| || |||||| ||||| | ||||||||||||  |||    
T  1778977 cttagatgaagtggtaatccattgaaaataaattcaaacacaattgtgaggttccgggttcgaacccgggtcacaatgtccggccttgcaatttcggcat 1778878  T
Q  383 ttatcagttgagctatgacttttagacga 411  Q
    || |||||||||||| ||||| |||||||    
T  1778877 ttgtcagttgagctaggacttctagacga 1778849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 475282 - 475321
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  475282 tcttagatgaagtggtaattcactg-aattaaactcacaca 475321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 2590811 - 2590843
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||| |||||||||||||    
T  2590811 tcttagatgaagtggtaatccactgaaattaaa 2590843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 3112996 - 3113036
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  3112996 tcttagatgaagtggtaatccactgaaaataaactcacaca 3113036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 7824455 - 7824495
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  7824455 tcttagatgaagtggtaatccactgaaaataaactcacaca 7824495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 29689483 - 29689523
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  29689483 tcttagatgaagtggtaatccactgaaaataaactcacaca 29689523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 42392806 - 42392846
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  42392806 tcttagatgaagtggtaaaccactgaaattaaactcacaca 42392846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 43247651 - 43247691
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  43247651 tcttagatgaagtggtaatccactgaaaataaactcacaca 43247691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 43775350 - 43775318
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||| |||||||||||||    
T  43775350 tcttagatgaagtggtaatccactgaaattaaa 43775318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 51665926 - 51665966
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  51665926 tcttagatgaagtggtaatccactgaaaataaactcacaca 51665966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 54158393 - 54158353
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  54158393 tcttagatgaagtggtaatccactgaaaataaactcacaca 54158353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 55320401 - 55320441
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  55320401 tcttagatgaagtggtaatccactgaaaataaactcacaca 55320441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 27915581 - 27915709
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattca--cacaactgtga-atctcaagtttgaa-tccaggtcacgatgtctgaccttgcaatttcaac 380  Q
    |||||||||||||||||||||| |||||||||| |||  ||||||||||| |||| | ||| ||| || ||||||||| ||| ||||||||||||||| |    
T  27915581 tcttagatgaagtggtaattcattgaaattaaactcatacacaactgtgagatcttaggttcgaactcaaggtcacgacgtccgaccttgcaatttcagc 27915680  T
Q  381 atttatcagttgagctatgacttttagac 409  Q
    ||||| |||||||| || ||||| |||||    
T  27915681 atttaccagttgagttaggacttctagac 27915709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 7162791 - 7162916
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaacatt 383  Q
    ||||||||||||||||||| |||||||| |||| |||||||| |||||  || | |||| ||| || |||||| | ||| | |||| |||||||  ||||    
T  7162791 tcttagatgaagtggtaatccactgaaaataaactcacacaattgtgaggtcccgagttcgaacccgggtcacaacgtccggccttacaatttcggcatt 7162890  T
Q  384 tatcagttgagctatgacttttagac 409  Q
    |  ||||||||||| |||||||||||    
T  7162891 tgccagttgagctaggacttttagac 7162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 42081620 - 42081667
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  42081620 tcttagataaagtggtaattcactgaaaataaactcacacaactgtga 42081667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 48444153 - 48444203
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa--ttcacacaactgtgaa 333  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  48444153 tcttagatgaagtggtaattcactgaaattaaacttacacacaactgtgaa 48444203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 32606331 - 32606369
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcaca 323  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  32606331 tcttagatgaattggtaattcactgaaattaaattcaca 32606369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 8439205 - 8439165
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  8439205 tcttagatgaagtggtaatccactgaaaataaattcacaca 8439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 11355950 - 11355910
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  11355950 tcttagatgaagtggtaatccactgaaattaaactcacaca 11355910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 409
Target Start/End: Original strand, 15634882 - 15635007
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaatt--cacacaactgtgaatctcaagttt-gaatccaggtcacgatgtctgaccttgcaatttcaacatt 383  Q
    |||||||||||||||||  ||||||| |||| |  ||||||||||||||  ||  |||| |||||| |||||||| ||| ||| || |||||||  ||||    
T  15634882 ttagatgaagtggtaatctactgaaaataaactcacacacaactgtgaagttccggtttcgaatccgggtcacgacgtccgactttacaatttcggcatt 15634981  T
Q  384 tatcagttgagctatgacttttagac 409  Q
    |   |||||||||||||||| |||||    
T  15634982 tgctagttgagctatgacttctagac 15635007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 43753752 - 43753786
Alignment:
Q  283 tatcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||||| |||||||||||||    
T  43753752 tatcttagatgaagtggtaatccactgaaattaaa 43753786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 23036208 - 23036253
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    ||||||||||||||||| || |||||||||| ||||| ||||||||    
T  23036208 ttagatgaagtggtaatccattgaaattaaactcacataactgtga 23036253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 4106865 - 4106825
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  4106865 tcttagatgaagtggtaatccactgaaaataaactcacaca 4106825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 4107436 - 4107396
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  4107436 tcttagatgaagtggtaatccactgaaaataaactcacaca 4107396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 5772820 - 5772947
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||| ||||||||||||  ||||||||||||| |  |||||||||||||  | || |||| ||| || ||||||  |||| ||||||||||||||  ||    
T  5772820 tcttaaatgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtttcgagttcgaacccgggtcacattgtccgaccttgcaatttcggca 5772919  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  | ||||||||| ||||| |||||    
T  5772920 tttgcccgttgagctaagacttctagac 5772947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 19630669 - 19630709
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  19630669 tcttagatgaagtggtaatccactgaaaataaactcacaca 19630709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 23358312 - 23358272
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  23358312 tcttagatgaagtggtaatccactgaaaataaactcacaca 23358272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 25546276 - 25546316
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  25546276 tcttagatgaagtggtaaaccactgaaattaaactcacaca 25546316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 28110995 - 28111059
Alignment:
Q  345 aatccaggtcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgacttttagac 409  Q
    |||| ||||||||| ||| || ||||||||||| |||||| ||||||||| || ||||| |||||    
T  28110995 aatctaggtcacgacgtccgatcttgcaatttcgacatttgtcagttgagttaagacttctagac 28111059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 31770533 - 31770573
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  31770533 tcttagatgaagtggtaatccactgaaaataaactcacaca 31770573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 38781209 - 38781249
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  38781209 tcttagatgaagtggtaatccactgaaaataaactcacaca 38781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 47250252 - 47250292
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  47250252 tcttagatgaagtggtaatccactgaaaataaactcacaca 47250292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 47570719 - 47570759
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  47570719 tcttagatgaagtggtaatccactgaaaataaactcacaca 47570759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 23710337 - 23710461
Alignment:
Q  288 tagatgaagtggtaattcactgaaattaaattcacac--aactgtgaatctcaagttt-gaatccaggtcacgatgtctgaccttgcaatttcaacattt 384  Q
    |||||||||||||||| ||||||||||||| ||||||  ||||||||   || || || |||||| |||||||| ||| | |||||||||||| ||||||    
T  23710337 tagatgaagtggtaatccactgaaattaaactcacacgtaactgtgaggttccaggttcgaatccgggtcacgacgtccggccttgcaatttcgacattt 23710436  T
Q  385 atcagttgagctatgacttttagac 409  Q
    | ||||||||||||||||| |||||    
T  23710437 accagttgagctatgacttctagac 23710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 12867968 - 12867853
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattca--cacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |||  ||||||||||| ||| || ||| |||  | |||||||| ||| ||||||||||||||  ||    
T  12867968 tcttagatgaagtggtaatccactgaaaataaactcactcacaactgtgagatcccaggttcgaactcgggtcacgacgtccgaccttgcaatttcggca 12867869  T
Q  382 tttatcagttgagcta 397  Q
    |||  |||||||||||    
T  12867868 tttgacagttgagcta 12867853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 1174078 - 1173951
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| |||||||| || ||| | ||||||||||||  ||    
T  1174078 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggca 1173979  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  ||||||||||| ||||| |||||    
T  1173978 tttgccagttgagctaggacttctagac 1173951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 16555434 - 16555394
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  16555434 tcttagatgaagtggtaattcattaaaattaaattcacaca 16555394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 23532172 - 23532134
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  23532172 ttagaagaagtggtaattcactgaaattaaactcacaca 23532134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 31015109 - 31014982
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaa--tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaac 380  Q
    ||||||||||||||||||  ||||||||||||| |||||||  |||||||   ||| || || ||| ||   ||| |||||| |||||| ||||||| |     
T  31015109 tcttagatgaagtggtaaagcactgaaattaaactcacacacaactgtgaggttctgaa-ttcgaacccgaatcatgatgtccgaccttacaatttccat 31015011  T
Q  381 atttatcagttgagctatgacttttagac 409  Q
    ||||| ||||||||||||||||| |||||    
T  31015010 atttagcagttgagctatgacttctagac 31014982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 32441154 - 32441212
Alignment:
Q  351 ggtcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgacttttagac 409  Q
    ||||| |||||||| |||||||||||| ||||||  ||||||||||| ||||| |||||    
T  32441154 ggtcatgatgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 32441212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 51287729 - 51287601
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa---ttcacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaac 380  Q
    ||||||||||| |||||||||||||||||||||     |||||||||||||  | ||  |||| || |||| |||||| |||||||||| ||||||   |    
T  51287729 tcttagatgaaatggtaattcactgaaattaaaactcacacacaactgtgaggtttcgggtttaaacccagatcacgacgtctgaccttacaattttggc 51287630  T
Q  381 atttatcagttgagctatgacttttagac 409  Q
    |||| |||| |||||| |||||| |||||    
T  51287629 atttgtcagctgagctgtgacttctagac 51287601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 37620744 - 37620703
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaa 326  Q
    |||| |||||||||||||| ||||||||||||| ||||||||    
T  37620744 tctttgatgaagtggtaatccactgaaattaaactcacacaa 37620703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 45874182 - 45874054
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| || |||||| | ||| | |||||||||||   ||    
T  45874182 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggca 45874083  T
Q  382 tttatcagttgagctatgacttttagacg 410  Q
    ||| |||||||||||| ||||| ||||||    
T  45874082 tttgtcagttgagctaggacttctagacg 45874054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 1966677 - 1966637
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||| ||||| ||||||||||||| |||||||    
T  1966677 tcttagatgaagttgtaatccactgaaattaaactcacaca 1966637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 12735558 - 12735518
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  12735558 tcttagatgaagtggtaatccactgaaaataaactcacaca 12735518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 23417484 - 23417524
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  23417484 tcttagatgaagtggtaatccactgaaaataaactcacaca 23417524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 26424859 - 26424899
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  26424859 tcttagatgaagtggtaatccactgaaaataaactcacaca 26424899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 28798389 - 28798429
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  28798389 tcttagatgaagtggtaatccactgaaaataaactcacaca 28798429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 34739407 - 34739367
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  34739407 tcttagatgaagtggtaatccactgaaaataaactcacaca 34739367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 41679431 - 41679375
Alignment:
Q  352 gtcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgacttttaga 408  Q
    ||||||| ||| ||||||| ||||||| ||||| ||||||||||||  |||||||||    
T  41679431 gtcacgacgtccgaccttgtaatttcagcatttgtcagttgagctagaacttttaga 41679375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 43139907 - 43139947
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  43139907 tcttagatgaagtggtaatccactgaaaataaactcacaca 43139947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 50347330 - 50347370
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||| |||||||| ||||||||||||| |||||||    
T  50347330 tcttagatgaggtggtaatccactgaaattaaactcacaca 50347370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 53457951 - 53457911
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  53457951 tcttagatgaagtggtaatccactgaaaataaactcacaca 53457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 2971111 - 2970984
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| ||| |||| |||| |||||||  |||||||  ||||| ||| ||| || |||||| | |||||||||| ||||||| |||    
T  2971111 tcttagatgaagtggtaatccaccgaaaataaactcacacacaactgtgaggtctcaggttcgaacccgggtcacaacgtctgaccttacaatttcgaca 2971012  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||||||||||||||| ||||| |||||    
T  2971011 tttatcagttgagctaggacttctagac 2970984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 3386892 - 3386934
Alignment:
Q  283 tatcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  3386892 tatcttagaagaagtggtaatccactgaaattaaattcacaca 3386934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 21112176 - 21112047
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattca--cacaactgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    |||||||||| |||||||| |||||||| |||| |||  ||||||| |||  || || ||| ||| | ||||||||| || || |||||||||||| |||    
T  21112176 tcttagatgatgtggtaatccactgaaaataaactcaaacacaactttgaggtcccaggttcgaacctaggtcacgacgtatgtccttgcaatttcgaca 21112077  T
Q  382 tttatcagttgagctatgacttttagacga 411  Q
    ||| |||| ||||||| ||||| |||||||    
T  21112076 tttgtcagctgagctaggacttctagacga 21112047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 409
Target Start/End: Complemental strand, 40177749 - 40177624
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaatctcaagtttg-aatccaggtcacgatgtctgaccttgcaatttcaacatt 383  Q
    ||||||||||||||||| |||||||| |||| |||||||  || |||||  ||  | ||| |||||||||||| | ||| | |||||||||||| |||||    
T  40177749 ttagatgaagtggtaatccactgaaaataaactcacacacaacggtgaagttccgggttggaatccaggtcacaacgtccggccttgcaatttcgacatt 40177650  T
Q  384 tatcagttgagctatgacttttagac 409  Q
    | |||||| ||||| ||||| |||||    
T  40177649 tgtcagttaagctaggacttctagac 40177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 13204084 - 13203957
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacac--aactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| ||||||  ||||||||  || |  ||| ||| || |||||||| ||| | ||||||||||||  ||    
T  13204084 tcttagatgaagtggtaatccactgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggca 13203985  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  ||||||||||| ||||| |||||    
T  13203984 tttgccagttgagctaggacttctagac 13203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 9577028 - 9577090
Alignment:
Q  348 ccaggtcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgacttttagacg 410  Q
    |||||||| || ||||| ||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  9577028 ccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttctagacg 9577090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 12257483 - 12257443
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  12257483 tcttagatgaagtggtaatccactgaaaataaactcacaca 12257443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 17465204 - 17465172
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||| |||||||||||||    
T  17465204 tcttagatgaagtggtaatccactgaaattaaa 17465172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 21018350 - 21018310
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  21018350 tcttagatgaagtggtaatccactgaaaataaactcacaca 21018310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 23262671 - 23262631
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  23262671 tcttagatgaagtggtaatccactgaaaataaactcacaca 23262631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 29266002 - 29265962
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  29266002 tcttagatgaagtggtaatccactgaaaataaactcacaca 29265962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 31909386 - 31909426
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  31909386 tcttagatgaagtggtaatccactgaaaataaactcacaca 31909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 32143415 - 32143455
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  32143415 tcttagatgaagtggtaatccactgaaaataaactcacaca 32143455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 35317698 - 35317738
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  35317698 tcttagatgaagtggtaatccactgaaaataaactcacaca 35317738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 45813012 - 45813139
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |||||||  |||||||  || |  ||| ||| || |||||||||||| ||||||||||||||  ||    
T  45813012 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggca 45813111  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    ||| |||||||||||| ||||| |||||    
T  45813112 tttgtcagttgagctaggacttctagac 45813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 4066088 - 4066050
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcaca 323  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  4066088 tcttagatgaagtggtaattcactgaaattaaactcaca 4066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 35945925 - 35945884
Alignment:
Q  284 atcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  35945925 atcttagatgaagtggtaatccactgaaaataaattcacaca 35945884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 778701 - 778661
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  778701 tcttagatgaattggtaattcactgaaattaaactcacaca 778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 9886893 - 9887020
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacac--aactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    |||||||||||||||||||||| ||| |||||| ||||||  |||||| |  |||  ||||| |||||| | ||||| || |   ||||||||||| |||    
T  9886893 tcttagatgaagtggtaattcagtgatattaaactcacacataactgttaggtcttgagtttaaatccaagacacgacgtttagtcttgcaatttcgaca 9886992  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    ||||||| ||||| |||||||| |||||    
T  9886993 tttatcaattgagttatgacttctagac 9887020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 13109897 - 13109857
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  13109897 tcttagatgaagtggtaatccactgaaattaaactcacaca 13109857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 13183179 - 13183215
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcaca 323  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13183179 ttagatgaagtggtaattcactgaaattaaactcaca 13183215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 39284346 - 39284290
Alignment:
Q  353 tcacgatgtctgaccttgcaatttcaacatttatcagttgagctatgacttttagac 409  Q
    |||||| ||| |||||| |||||||||||||  |||||||||||||||||| |||||    
T  39284346 tcacgacgtccgaccttacaatttcaacattcgtcagttgagctatgacttctagac 39284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 2088908 - 2089034
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcaca--caactgtgaatctca-agtttgaatccaggtcacgatgtctgaccttgcaatttcaacatt 383  Q
    ||||||||||||||||| |||||||||| || |||||  ||| |||||   ||  |||| ||| ||  |||||||||||||||||| ||||||| | |||    
T  2088908 ttagatgaagtggtaatccactgaaattgaactcacatacaattgtgaggttctgagttcgaacccgagtcacgatgtctgaccttacaatttcgatatt 2089007  T
Q  384 tatcagttgagctatgacttttagacg 410  Q
    |  ||||||||||| ||||| ||||||    
T  2089008 tgccagttgagctaggacttctagacg 2089034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 7059594 - 7059500
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaattt 376  Q
    |||||||| |||||||||| |||| |||||||| |||||||  |||||||  |||||  || ||| || |||||||| |||||||||||||||||    
T  7059594 tcttagataaagtggtaatccacttaaattaaactcacacacaactgtgaggtctcagattcgaacccgggtcacgacgtctgaccttgcaattt 7059500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 47111518 - 47111468
Alignment:
Q  348 ccaggtcacgatgtctgaccttgcaatttcaacatttatcagttgagctat 398  Q
    ||||||||||| ||| ||||||||||||||  ||||| |||||||||||||    
T  47111518 ccaggtcacgacgtccgaccttgcaatttcggcatttgtcagttgagctat 47111468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 49783834 - 49783796
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcaca 323  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  49783834 tcttagatgaagtggtaaaccactgaaattaaattcaca 49783796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 13097431 - 13097339
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcac--acaactgtgaatctc-aagtttgaatccaggtcacgatgtctgaccttgcaat 374  Q
    ||||||||||||||||||| || | |||||||| ||||  ||||||||||   || | |||||||||| |||||||| ||| |||||||||||    
T  13097431 tcttagatgaagtggtaatccaataaaattaaactcacatacaactgtgaggttctaggtttgaatccgggtcacgacgtccgaccttgcaat 13097339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 26032928 - 26032887
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaa 326  Q
    |||||||||||| |||||| ||||||||||||| ||||||||    
T  26032928 tcttagatgaagcggtaatccactgaaattaaactcacacaa 26032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 4062978 - 4062938
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||| ||||||||| |||||||| |||||||    
T  4062978 tcttagatgaagtgataattcactcaaattaaactcacaca 4062938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 5055789 - 5055829
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  5055789 tcttagatgaagtggtaatccactgaaaataaactcacaca 5055829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 28456001 - 28455961
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  28456001 tcttagatgaagtggtaatccactgaaaataaactcacaca 28455961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 29994384 - 29994424
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  29994384 tcttagatgaagtggtaaaccactgaaattaaactcacaca 29994424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 32007201 - 32007161
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  32007201 tcttagatgaagtggtaatccactgaaaataaactcacaca 32007161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 32982351 - 32982478
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtgaat-ctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||| ||||  ||||||||| ||| |||||||  ||||||| | |||| |||||||| | |||||  | || || |||| || ||||  ||    
T  32982351 tcttagatgaagtagtaaaccactgaaatcaaactcacacacaactgtgatttctcaggtttgaattcgggtcataaagtttggccttacagtttcggca 32982450  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||||||||||||||| ||||| |||||    
T  32982451 tttatcagttgagctaggacttctagac 32982478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 41039304 - 41039344
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  41039304 tcttagatgaagtggtaatccactgaaaataaactcacaca 41039344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 41808329 - 41808289
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  41808329 tcttagatgaagtggtaatccactgaaaataaactcacaca 41808289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 48660149 - 48660109
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  48660149 tcttagatgaagtggtaatccactgaaaataaactcacaca 48660109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 19145597 - 19145557
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19145597 tcttagatgaagtggtaatccactgaaattaaattcacaca 19145557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 21037417 - 21037377
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  21037417 tcttagatgaagtggtaattcactgaaaataaactcacaca 21037377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 16518548 - 16518501
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    ||||||||||| ||||||| |||||||| |||| ||||||||||||||    
T  16518548 tcttagatgaaatggtaatccactgaaaataaactcacacaactgtga 16518501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 5598776 - 5598900
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||| |||| ||| |||| || ||||| ||||||||||||  ||||||| || | ||||||||| | |  |||||| ||||| |||||||||||  |||    
T  5598776 tcttatatgatgtgttaatccattgaaaataaattcacacataactgtgagattttaagtttgaaccaaaatcacgacgtctggccttgcaattttgaca 5598875  T
Q  382 tttatcagttgagctatgactttta 406  Q
    ||| |||||||||||| || |||||    
T  5598876 tttgtcagttgagctaagattttta 5598900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 4464254 - 4464214
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  4464254 tcttagatgaagtggtaaaccactgaaattaaactcacaca 4464214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 7014313 - 7014349
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcaca 323  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  7014313 ttagatgaagtggtaatacactgaaattaaactcaca 7014349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 24619080 - 24619120
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  24619080 tcttagatgaagtggtaatcgactgaaattaaactcacaca 24619120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 29009651 - 29009691
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  29009651 tcttagatgaagtggtaattcactaaaaataaactcacaca 29009691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 33621621 - 33621581
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  33621621 tcttagatgaagtggtaaaccactgaaattaaactcacaca 33621581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 35218641 - 35218681
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  35218641 tcttagatgaagtggtaatccactgaaaataaactcacaca 35218681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 10963243 - 10963290
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  10963243 tcttagatgaagtggtaatccactgaaaataaactcacacaactgtga 10963290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 9292145 - 9292018
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtgaa-tctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||| || | |||| |||| | |||||| | ||| | | || ||||||| |||    
T  9292145 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaagtcccgagttcgaattcgggtcacaacgtccggctttacaatttcgaca 9292046  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  ||||||||||| ||||| |||||    
T  9292045 tttgccagttgagctaggacttctagac 9292018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 28817383 - 28817256
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca--actgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |||||||  ||||||| ||| |  ||| ||| || |||||| | ||| | ||||||||||||  ||    
T  28817383 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggca 28817284  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  ||||||||||| ||||| |||||    
T  28817283 tttgccagttgagctaggacttctagac 28817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 29425478 - 29425438
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  29425478 tcttagatgaagtggtaatccactgaaattaaactcacaca 29425438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 31969721 - 31969761
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  31969721 tcttagatgaagtggtaaaccactgaaattaaattcacaca 31969761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 411
Target Start/End: Original strand, 6602519 - 6602648
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| || ||||| || ||| | ||||||||||||  ||    
T  6602519 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggca 6602618  T
Q  382 tttatcagttgagctatgacttttagacga 411  Q
    |||  ||||||||||| ||||| |||||||    
T  6602619 tttgccagttgagctaggacttctagacga 6602648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 411
Target Start/End: Original strand, 6677972 - 6678101
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| || ||||| || ||| | ||||||||||||  ||    
T  6677972 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggca 6678071  T
Q  382 tttatcagttgagctatgacttttagacga 411  Q
    |||  ||||||||||| ||||| |||||||    
T  6678072 tttgccagttgagctaggacttctagacga 6678101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 31532128 - 31532166
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  31532128 ttagatgaagtggtaatccactgaaattaaactcacaca 31532166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 1078649 - 1078777
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| |  ||||| || ||| | ||||||||||||  ||    
T  1078649 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacctgggtcatgacgtccggccttgcaatttcggca 1078748  T
Q  382 tttatcagttgagctatgacttttagacg 410  Q
    |||| ||||||||||| ||||| ||||||    
T  1078749 tttaccagttgagctacgacttctagacg 1078777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 40911348 - 40911307
Alignment:
Q  284 atcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||||  ||||||||||||| |||||||    
T  40911348 atcttagatgaagtggtaagccactgaaattaaactcacaca 40911307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 45264641 - 45264682
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaa 326  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  45264641 tcttagaggaagtggtaatccactgaaattaaactcacacaa 45264682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 1341 - 1381
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  1341 tcttagatgaagtggtaatccactgaaaataaactcacaca 1381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 70524 - 70564
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  70524 tcttagatgaagtggtaatccactgaaaataaactcacaca 70564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 3822523 - 3822483
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||| |||||||||||||||| |||||||| |||||||    
T  3822523 tcttagaagaagtggtaattcactaaaattaaactcacaca 3822483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 4530983 - 4531023
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  4530983 tcttagatgaagtggtaaaccactgaaattaaactcacaca 4531023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 32333241 - 32333201
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  32333241 tcttagatgaagtggtaatccactgaaaataaactcacaca 32333201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 35779498 - 35779538
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  35779498 tcttagatgaagtggtaatccactgaaaataaactcacaca 35779538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 39303437 - 39303405
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||| |||||||||||||    
T  39303437 tcttagatgaagtggtaatccactgaaattaaa 39303405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 42192640 - 42192680
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  42192640 tcttagatgaagtggtaatccactgaaaataaactcacaca 42192680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 42885301 - 42885261
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  42885301 tcttagatgaagtggtaatccactgaaaataaactcacaca 42885261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 10772076 - 10772121
Alignment:
Q  364 gaccttgcaatttcaacatttatcagttgagctatgacttttagac 409  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||    
T  10772076 gaccttacaatttcaatatttaccagttgagctatgacttttagac 10772121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 26605751 - 26605623
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattca--cacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| ||||||||  |||||||||||  || |  ||| ||| || |||||| | ||| | ||||||||||||  ||    
T  26605751 tcttagatgaagtggtaatccactgaaaataaattcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggca 26605652  T
Q  382 tttatcagttgagctatgacttttagacg 410  Q
    |||  ||||||||||| ||||| ||||||    
T  26605651 tttgccagttgagctaggacttctagacg 26605623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 27137919 - 27138046
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcac--acaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| ||||||||||||| ||||  | |||||| |  || |  ||| ||| ||||||||||||||  | |||| |||||||| ||    
T  27137919 tcttagatgaagtggtaatccactgaaattaaactcacataaaactgtaaggtcccgggttcgaacccaggtcacgatgttcggcctt-caatttcagca 27138017  T
Q  382 tttatcagttgagctatgacttttagacg 410  Q
    ||| |||||||||||| ||||| ||||||    
T  27138018 tttgtcagttgagctaggacttctagacg 27138046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 11816551 - 11816673
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaatt-aaattcac--acaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaac 380  Q
    ||||||||||||||||||| |||||||||| ||| ||||  ||||||||||  |  |  ||| ||| ||||||||||| ||| ||||||||||||||  |    
T  11816551 tcttagatgaagtggtaatccactgaaattaaaactcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccgaccttgcaatttcggc 11816650  T
Q  381 atttatcagttgagctatgactt 403  Q
    ||||  ||||||||||| |||||    
T  11816651 atttgccagttgagctaggactt 11816673  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 13106492 - 13106445
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    |||||||||||||||||| |||||||||| ||| ||||||||| ||||    
T  13106492 tcttagatgaagtggtaaatcactgaaataaaactcacacaaccgtga 13106445  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 21312330 - 21312283
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacacaactgtga 332  Q
    |||||||||||||||||||||||| ||| |||| |||||||| |||||    
T  21312330 tcttagatgaagtggtaattcactaaaaataaactcacacaattgtga 21312283  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 4801001 - 4800963
Alignment:
Q  287 ttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  4801001 ttagatgaagtggtaattcactggaattaaactcacaca 4800963  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 10639607 - 10639647
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  10639607 tcttagatgaagtggtaatccactgaaaataaactcacaca 10639647  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 23839986 - 23839946
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  23839986 tcttagatgaagtggtaatccactgaaaataaactcacaca 23839946  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 29659219 - 29659259
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  29659219 tcttagatgaagtggtaatccactgaaaataaactcacaca 29659259  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 33083555 - 33083595
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  33083555 tcttagatgaagtggtaatccactgaaaataaactcacaca 33083595  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 34460496 - 34460456
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  34460496 tcttagatgaagtggtaatccactgaaaataaactcacaca 34460456  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 37197611 - 37197651
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  37197611 tcttagatgaagtggtaatccactgaaaataaactcacaca 37197651  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 38440198 - 38440238
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||| |||||||| |||||||    
T  38440198 tcttagatgaagtggtaatccactaaaattaaactcacaca 38440238  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 39831445 - 39831485
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  39831445 tcttagatgaagtggtaaaccactgaaattaaactcacaca 39831485  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 42578295 - 42578255
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  42578295 tcttagatgaagtggtaatccactgaaaataaactcacaca 42578255  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 45125166 - 45125206
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  45125166 tcttagatgaagtggtaatccactgaaaataaactcacaca 45125206  T

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Target: scaffold0352 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 8944 - 8984
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  8944 tcttagatgaagtggtaaatcactgaaattaaactcacaca 8984  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 56608 - 56481
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaatt--cacacaactgtga-atctcaagtttgaatccaggtcacgatgtctgaccttgcaatttcaaca 381  Q
    ||||||||||||||||||| |||||||| |||| |  |||||||||||||  || |  ||| ||| || |||||| | ||| ||||||||||||||  ||    
T  56608 tcttagatgaagtggtaatccactgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggca 56509  T
Q  382 tttatcagttgagctatgacttttagac 409  Q
    |||  ||||||||||| ||||| |||||    
T  56508 tttgccagttgagctaggacttctagac 56481  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 22290 - 22251
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacac 324  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  22290 tcttagatgaagtggtaatccactgaaattaaactcacac 22251  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 14633 - 14592
Alignment:
Q  284 atcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  14633 atcttagattaagtggtaatccactgaaattaaactcacaca 14592  T

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Target: scaffold1348 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 863 - 903
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  863 tcttagatgaagtggtaatccactgaaaataaactcacaca 903  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 13952 - 13992
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  13952 tcttagatgaagtggtaatccactgaaaataaactcacaca 13992  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 19632 - 19672
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  19632 tcttagatgaagtggtaatccactgaaaataaactcacaca 19672  T

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Target: scaffold0067 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 34946 - 34914
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaa 317  Q
    ||||||||||||||||||| |||||||||||||    
T  34946 tcttagatgaagtggtaatccactgaaattaaa 34914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 9974 - 10014
Alignment:
Q  285 tcttagatgaagtggtaattcactgaaattaaattcacaca 325  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  9974 tcttagatgaagtggtaatccactgaaaataaactcacaca 10014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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