View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_23 (Length: 341)
Name: NF19463_low_23
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 27755720 - 27755407
Alignment:
| Q |
15 |
aatagcacctatggcgactatagcaagaaagcaaacagggaagcgtattgagttaggtgctaatagcaaaaccacgtcgcctcgtcgaataccaaggtgg |
114 |
Q |
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| T |
27755720 |
aatagcacctatggcgactatagcaaggaagcaaacagggaagcgtattgagttaggtgctaatagcaaaaccacgtcgcctcgtcgaataccaaggtgg |
27755621 |
T |
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| Q |
115 |
agcaaagatcgggagagggcggagacatggattttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgattgtgtcggcgacag |
214 |
Q |
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| T |
27755620 |
agcaaagagtgggagagggcggaaacatggattttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgatggtgtcggcgacag |
27755521 |
T |
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| Q |
215 |
aggaagtagattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggtt |
314 |
Q |
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| T |
27755520 |
aggaagttgattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggtt |
27755421 |
T |
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| Q |
315 |
gaagcagttttttg |
328 |
Q |
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| T |
27755420 |
gaagcagttttttg |
27755407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 27766380 - 27766069
Alignment:
| Q |
15 |
aatagcacctatggcgactatagcaagaaagcaaacagggaagcgtattgagttaggtgctaatagcaaaaccacgtcgcctcgtcgaataccaaggtgg |
114 |
Q |
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| T |
27766380 |
aatagcacctatggcggcgacagcgaggaagcagacggggaaacgtatggagtttggtgcgtatagcataacgacatcgcctcgtttgattccgagactg |
27766281 |
T |
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| Q |
115 |
agcaaagatcgggagagggcggagacatggattttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgattgtgtcggcgacag |
214 |
Q |
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| T |
27766280 |
agcaatgagcgggagaggtaggagacttccttttcgagctggcggaaggttaggaattcaccggtttgggcgtcggtaagggcgatggtgtcggcggcgg |
27766181 |
T |
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| Q |
215 |
aggaagtagattggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggtt |
314 |
Q |
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||||||| |||||||||||||| || |||| ||| ||||| |||| ||||||||||| |||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
27766180 |
aggaagtggattggaagaggaatgaagttagagaaaggttctgatcagtgggaaggttgatggattgtcttggtgaggaatacgtcatcgttttgaggtt |
27766081 |
T |
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| Q |
315 |
gaagcagttttt |
326 |
Q |
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|||||||||||| |
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| T |
27766080 |
gaagcagttttt |
27766069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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