View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19463_low_26 (Length: 288)

Name: NF19463_low_26
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19463_low_26
NF19463_low_26
[»] chr3 (2 HSPs)
chr3 (17-272)||(36743922-36744177)
chr3 (79-111)||(35722340-35722372)
[»] chr8 (10 HSPs)
chr8 (17-116)||(6392095-6392194)
chr8 (17-116)||(6364472-6364571)
chr8 (17-116)||(7460671-7460770)
chr8 (30-116)||(6411259-6411345)
chr8 (17-116)||(6353599-6353698)
chr8 (17-113)||(6290510-6290606)
chr8 (40-116)||(6264930-6265006)
chr8 (40-116)||(6425289-6425365)
chr8 (40-116)||(6275755-6275831)
chr8 (88-126)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (42-122)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (103-225)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 36743922 - 36744177
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743922 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 36744021  T
Q  117 aaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36744022 aaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaa 36744121  T
Q  217 acaggttagttagttagttagttaatctctacgttaattgctctcaactttttctt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744122 acaggttagttagttagttagttaatctctacgttaattgctctcaactttttctt 36744177  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  79 gacagaatctatgattatgatgtttacaatgat 111  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 6364571 - 6364472
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  6364571 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 7460770 - 7460671
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  |||||||||||||||| |||||||||||||| |||||||| |||||    
T  7460770 actacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  30 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 6353698 - 6353599
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  |||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  6353698 actacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 6290606 - 6290510
Alignment:
Q  17 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgattt 113  Q
    |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  |||||||||| ||||| |||||||| ||||| |||||||||||    
T  6290606 actatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  40 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  40 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  40 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 116  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  88 tatgattatgatgtttacaatgatttgggaaatccagat 126  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  42 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 122  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  103 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 202  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  203 gaaaaccgaccaaaacaggttag 225  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

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