View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_28 (Length: 266)
Name: NF19463_low_28
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 26305987 - 26306165
Alignment:
| Q |
77 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttttacctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
176 |
Q |
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| T |
26305987 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttt-acctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
26306085 |
T |
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| Q |
177 |
gagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccctttg |
256 |
Q |
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| T |
26306086 |
gagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttg |
26306165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 26305894 - 26305958
Alignment:
| Q |
17 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
81 |
Q |
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| T |
26305894 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
26305958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 781445 - 781550
Alignment:
| Q |
137 |
tgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagcct |
236 |
Q |
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| T |
781445 |
tgagataaactccatttgaagctagatgaagaacacgaaagagatgaggctgttctgaatgaccacgcatgtgactaaggaagtacattatatgaagcat |
781544 |
T |
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| Q |
237 |
tctaac |
242 |
Q |
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| T |
781545 |
tctaac |
781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 46209322 - 46209431
Alignment:
| Q |
136 |
ctgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagcc |
235 |
Q |
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|||||||||||| ||||| |||| ||| ||||||||| ||||||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||| |
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| T |
46209322 |
ctgagataaacatcgttttgagctagacgaagaacactaatgagacgataatgttctgcaaaaccacccatgtagctaaataagcagattatgtgaagcc |
46209421 |
T |
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| Q |
236 |
ttctaacttc |
245 |
Q |
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| T |
46209422 |
ttctaacttc |
46209431 |
T |
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