View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19463_low_29 (Length: 263)
Name: NF19463_low_29
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_29 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 7154535 - 7154291
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtcca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154535 |
ttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtcca |
7154436 |
T |
|
| Q |
103 |
atattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctcta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154435 |
atattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctcta |
7154336 |
T |
|
| Q |
203 |
gggaccaataaaggtgaaggtgggtgtaacctcattgtttctttg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154335 |
gggaccaataaaggtgaaggtgggtgtaacctcattgtttctttg |
7154291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 7132030 - 7131810
Alignment:
| Q |
14 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
113 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| | |||||||| ||||||| ||||| ||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
7132030 |
ccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggat |
7131931 |
T |
|
| Q |
114 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
213 |
Q |
| |
|
| ||||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| |
|
|
| T |
7131930 |
cccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataa |
7131831 |
T |
|
| Q |
214 |
aggtgaaggtgggtgtaacct |
234 |
Q |
| |
|
||| | ||||| ||||||||| |
|
|
| T |
7131830 |
aggagtaggtgagtgtaacct |
7131810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 7141763 - 7141521
Alignment:
| Q |
5 |
cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaat |
104 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
7141763 |
cttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaat |
7141664 |
T |
|
| Q |
105 |
attgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagg |
204 |
Q |
| |
|
||| ||||||||| | | |||||| |||||||| | ||| |||||||||||||||| ||||| |||||||| |||| | ||| |||| ||| || |
|
|
| T |
7141663 |
atttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttgg |
7141564 |
T |
|
| Q |
205 |
gaccaataaaggtgaaggtgggtgtaacctcattgtttctttg |
247 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
7141563 |
aaccaacaaaggagaaggtgggtgtaacctcaatgtttctttg |
7141521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 22986277 - 22986347
Alignment:
| Q |
5 |
cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctc |
75 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| || ||||||||| |
|
|
| T |
22986277 |
cttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctc |
22986347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 22971949 - 22971999
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa |
53 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
22971949 |
ttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa |
22971999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22946404 - 22946452
Alignment:
| Q |
5 |
cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa |
53 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
22946404 |
cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa |
22946452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 12636999 - 12637042
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaattatttcctttg |
46 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12636999 |
ttcttcctgcaccaaaaggaatgtactcaaaattatttcctttg |
12637042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 12609903 - 12609946
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaattatttcctttg |
46 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
12609903 |
ttcttccagcaccaaagggaatgtactcaaaattattccctttg |
12609946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 15885964 - 15885922
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaattatttccttt |
45 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
15885964 |
ttcttccagaaccaaaaggaatgtactcaaaattattcccttt |
15885922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 6756 - 6722
Alignment:
| Q |
3 |
ttcttccagcaccaaaaggaatatactcaaaatta |
37 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
6756 |
ttcttccagcaccaaaaggaatgtactcaaaatta |
6722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 55954999 - 55955067
Alignment:
| Q |
110 |
ggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatg |
178 |
Q |
| |
|
||||||||| | | |||||||||||||| ||||| |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
55954999 |
ggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatg |
55955067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University