View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_32 (Length: 254)
Name: NF19463_low_32
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_32 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 25521900 - 25522130
Alignment:
| Q |
19 |
ggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgactggtcttaagttgttatattg |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
25521900 |
ggatgaccaaattgcaagaactcgatctatattttaacaaattagaaggacagattccatcttcgttatttaaattgactggtcttaagttgttatattg |
25521999 |
T |
|
| Q |
119 |
ttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25522000 |
ttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaatt |
25522099 |
T |
|
| Q |
219 |
ccttcctctttgttatctttaccttctttgg |
249 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
25522100 |
ccttcctctttgttatctttgccttctttgg |
25522130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 11119295 - 11119079
Alignment:
| Q |
19 |
ggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgactggtcttaagttg--ttatat |
116 |
Q |
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||||||| ||||||||||||||||| || ||| |||||| |||||||||||||||||||| |||||||||||||||||| ||| |||| ||| | |
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| T |
11119295 |
ggatgacaaaactgcaagaactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaactt--gttgcattaggt |
11119198 |
T |
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| Q |
117 |
tgttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaa |
216 |
Q |
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|||||||||||||||||||| ||||| | || |||||||||| |||||||||||||||||| |||| || ||| ||||||||||| |||||||||||| |
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| T |
11119197 |
tgttctaataataaattagatggtcccctgcccaacaaaattacagggttccaaaagctaacaaatttgagattaaatgacaacttgataaatggaacaa |
11119098 |
T |
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| Q |
217 |
ttccttcctctttgttatc |
235 |
Q |
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|||||||||| |||||||| |
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| T |
11119097 |
ttccttcctccttgttatc |
11119079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 34239434 - 34239665
Alignment:
| Q |
18 |
aggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgactggtcttaagttg--ttata |
115 |
Q |
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||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||| | |
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| T |
34239434 |
aggatgaccaaactgcaagtattctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaactt--gttgatttaga |
34239531 |
T |
|
| Q |
116 |
ttgttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaaca |
215 |
Q |
| |
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|||| || ||||||||||||||||||| ||| ||| |||||| ||| || |||||||||| | |||| || ||| ||||||||||| ||||||||||| |
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| T |
34239532 |
ttgtgcttataataaattagagggtccactacataataaaattgcaggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaaca |
34239631 |
T |
|
| Q |
216 |
attccttcctctttgttatctttaccttctttgg |
249 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| |
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| T |
34239632 |
attccttcctccttgttatctttgccttctttgg |
34239665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 42130050 - 42129870
Alignment:
| Q |
69 |
caaattccatcttcattatttaacttgactggtcttaagttgttatattgttctaataataaattagagggtcctttacctaacaaaattatagggttcc |
168 |
Q |
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|||||||||||||||||||||||||||| | ||| | ||| |||||||||| ||||||||||||||||| |||| ||||||| || |||||||| |
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| T |
42130050 |
caaattccatcttcattatttaacttgaatcaactttatacattagattgttctaaaaataaattagagggtcccatacccaacaaaactacagggttcc |
42129951 |
T |
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| Q |
169 |
aaaagctaactgatttaagtttacatgacaacttgttaaatggaacaattccttcctctttgttatctttaccttctttgg |
249 |
Q |
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|| |||||| |||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
42129950 |
aagagctaaatgatttgagattaaatgacaacttgttaaatggaacaattccttcctccttgttatctttgccgtctttgg |
42129870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 42124725 - 42124493
Alignment:
| Q |
19 |
ggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgactggtcttaagttgttatattg |
118 |
Q |
| |
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|||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||||||||||| ||| ||| |||| |
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| T |
42124725 |
ggatgaccaaactgcaagaactcgatttaacttccaacaatttagaaggacaaattccatcttcactatttaacttgactcagcttttcacattagattg |
42124626 |
T |
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| Q |
119 |
ttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaatt |
218 |
Q |
| |
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| ||| |||||||||||||| |||| |||||||||| ||| |||||||||||| |||| | |||| | ||||||||| ||||||||||| || |
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| T |
42124625 |
tagaggtaacaaattagagggtcccctacccaacaaaattacaggactccaaaagctaatgtatttgaatttaaaagacaacttgctaaatggaacagtt |
42124526 |
T |
|
| Q |
219 |
ccttcctctttgttatctttaccttctttggca |
251 |
Q |
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|||||||| ||||||||||| |||||||||||| |
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| T |
42124525 |
ccttcctccttgttatctttgccttctttggca |
42124493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 41712561 - 41712659
Alignment:
| Q |
151 |
acaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaattccttcctctttgttatctttaccttctttgg |
249 |
Q |
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|
||||||||| ||||||||||||||||||| |||| |||| ||| |||||||||||||||| |||||||| |||| ||||| || || |||||||||| |
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| T |
41712561 |
acaaaattacagggttccaaaagctaactaatttgtatttaaatggcaacttgttaaatggagcaattcctccctccttgttttcctttccttctttgg |
41712659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 34231683 - 34231762
Alignment:
| Q |
19 |
ggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgact |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||| ||| |||||||| |||||| |
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| T |
34231683 |
ggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagttgact |
34231762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 34231869 - 34231902
Alignment:
| Q |
205 |
taaatggaacaattccttcctctttgttatcttt |
238 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
34231869 |
taaacggaacaattccttcctctttgttatcttt |
34231902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 41570984 - 41571041
Alignment:
| Q |
115 |
attgttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaa |
172 |
Q |
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|||||||| ||||||||||| |||||||| |||| |||||||| | |||||| ||||| |
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| T |
41570984 |
attgttcttataataaattaaagggtcctctacccaacaaaataacagggtttcaaaa |
41571041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 12249698 - 12249464
Alignment:
| Q |
20 |
gatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttcattatttaacttgactggtcttaagttgttatattgt |
119 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||||| ||||||||||||| | ||||||||||||||||||| ||| ||| ||||| |
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| T |
12249698 |
gatgaccaaactgcaagaactcaatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgt |
12249599 |
T |
|
| Q |
120 |
tctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaactgatttaagtttacatgacaacttgttaaatggaacaattc |
219 |
Q |
| |
|
|| |||| |||||||| ||||| | |||||||| | |||||| |||||| ||||| |||| |||||| ||| ||||| |||| |||||||||| |
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| T |
12249598 |
tcgcataacaaattagaaggtccccttggcaacaaaatcacagggtttcaaaagttaacttatttcagtttaagtgataactttctaaacggaacaattc |
12249499 |
T |
|
| Q |
220 |
cttcctctttgttatctttaccttctttggcacat |
254 |
Q |
| |
|
|| || | ||||||||||| |||||||||| |||| |
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| T |
12249498 |
ctcccaccttgttatctttgccttctttggaacat |
12249464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 32680976 - 32681101
Alignment:
| Q |
63 |
gaaggacaaattccatcttcattatttaacttgactggtcttaagttg--ttatattgttctaataataaattagagggtcctttaccta----acaaaa |
156 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| |||| |||| ||| |||||||| |||||||||||||||||||| ||| || |||||| |
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| T |
32680976 |
gaaggagaaattccatattcattatttaacttgactcatctt--gttgcattagattgttctcataataaattagagggtcctatacatacagaacaaaa |
32681073 |
T |
|
| Q |
157 |
ttatagggttccaaaagctaactgattt |
184 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
32681074 |
ttgcagggttccaaaagctaactgattt |
32681101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 8524196 - 8524039
Alignment:
| Q |
78 |
tcttcattatttaacttgactggtcttaagttgttatattgttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaagctaa |
177 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||| ||||||||||||| ||||| ||||| ||||||| || ||| | |||||||||| |
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| T |
8524196 |
tcttcattatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaactacaggtcttcaaaagctaa |
8524097 |
T |
|
| Q |
178 |
ctgatttaagtttacatgacaacttgttaaatggaacaattccttcctctttgttatc |
235 |
Q |
| |
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|| |||| | ||| ||||||||||| ||||||| ||||||||| |||| |||||||| |
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| T |
8524096 |
ctaatttgcgattaaatgacaacttgctaaatggtacaattcctccctccttgttatc |
8524039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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