View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19463_low_4 (Length: 584)

Name: NF19463_low_4
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19463_low_4
NF19463_low_4
[»] chr7 (25 HSPs)
chr7 (199-569)||(34875461-34875831)
chr7 (234-412)||(39007530-39007708)
chr7 (29-109)||(34875306-34875386)
chr7 (231-290)||(46346719-46346778)
chr7 (231-284)||(6797394-6797447)
chr7 (231-295)||(44141249-44141313)
chr7 (231-293)||(5757390-5757452)
chr7 (231-293)||(27335629-27335690)
chr7 (231-295)||(16933242-16933306)
chr7 (231-295)||(16938625-16938689)
chr7 (231-295)||(20000672-20000736)
chr7 (231-295)||(763701-763765)
chr7 (231-295)||(11732645-11732709)
chr7 (231-295)||(30884220-30884284)
chr7 (231-295)||(31660073-31660137)
chr7 (231-295)||(41911107-41911171)
chr7 (231-295)||(46358524-46358588)
chr7 (231-288)||(24359875-24359932)
chr7 (231-284)||(45402879-45402932)
chr7 (231-295)||(47340150-47340215)
chr7 (68-105)||(23709315-23709352)
chr7 (254-299)||(25778863-25778908)
chr7 (267-296)||(32090584-32090613)
chr7 (242-295)||(35736963-35737016)
chr7 (256-293)||(46024055-46024092)
[»] chr1 (35 HSPs)
chr1 (230-569)||(31529389-31529728)
chr1 (226-569)||(51801457-51801800)
chr1 (231-409)||(2741040-2741215)
chr1 (227-297)||(33097405-33097475)
chr1 (229-302)||(44688601-44688674)
chr1 (298-409)||(28323177-28323288)
chr1 (229-295)||(44260520-44260586)
chr1 (231-293)||(37639345-37639407)
chr1 (231-296)||(28323329-28323394)
chr1 (231-293)||(35198181-35198243)
chr1 (235-284)||(20372213-20372262)
chr1 (231-295)||(51420349-51420412)
chr1 (241-295)||(34369674-34369728)
chr1 (231-284)||(13590471-13590524)
chr1 (231-295)||(11421598-11421662)
chr1 (231-295)||(49936935-49936999)
chr1 (231-295)||(50351807-50351871)
chr1 (231-284)||(5077457-5077510)
chr1 (235-284)||(13673899-13673948)
chr1 (231-288)||(21256777-21256834)
chr1 (256-320)||(23921871-23921935)
chr1 (231-295)||(24635930-24635994)
chr1 (231-295)||(30788352-30788414)
chr1 (231-295)||(4097906-4097970)
chr1 (231-295)||(18618839-18618903)
chr1 (231-295)||(19897758-19897822)
chr1 (231-295)||(20434720-20434784)
chr1 (231-295)||(23175520-23175584)
chr1 (231-295)||(25889026-25889090)
chr1 (231-295)||(28375468-28375532)
chr1 (231-295)||(43452546-43452610)
chr1 (231-295)||(48762329-48762393)
chr1 (256-293)||(18056812-18056849)
chr1 (231-295)||(6314119-6314183)
chr1 (243-295)||(16975970-16976022)
[»] chr3 (32 HSPs)
chr3 (229-412)||(53594970-53595153)
chr3 (231-295)||(47728392-47728456)
chr3 (230-295)||(37319458-37319523)
chr3 (231-295)||(51682000-51682064)
chr3 (231-290)||(23699331-23699390)
chr3 (231-290)||(23717786-23717845)
chr3 (231-290)||(23736242-23736301)
chr3 (231-284)||(32232995-32233048)
chr3 (231-286)||(23755289-23755344)
chr3 (231-295)||(26662536-26662600)
chr3 (231-295)||(33414011-33414075)
chr3 (229-296)||(39195105-39195172)
chr3 (235-293)||(28299952-28300010)
chr3 (231-295)||(3475405-3475469)
chr3 (231-295)||(9106271-9106335)
chr3 (231-295)||(19284675-19284739)
chr3 (231-295)||(46237756-46237820)
chr3 (231-295)||(47335036-47335100)
chr3 (231-288)||(34563352-34563409)
chr3 (231-288)||(41192355-41192412)
chr3 (231-288)||(51846785-51846842)
chr3 (231-295)||(2941924-2941988)
chr3 (231-295)||(9595978-9596042)
chr3 (231-295)||(10986356-10986420)
chr3 (231-295)||(30947909-30947973)
chr3 (232-284)||(41568836-41568888)
chr3 (231-295)||(54379167-54379231)
chr3 (256-295)||(19385313-19385352)
chr3 (256-295)||(51362436-51362475)
chr3 (256-293)||(50754034-50754071)
chr3 (256-293)||(52987650-52987687)
chr3 (231-295)||(6097682-6097746)
[»] chr8 (34 HSPs)
chr8 (231-412)||(12355426-12355607)
chr8 (428-569)||(38121861-38122002)
chr8 (231-410)||(2522871-2523050)
chr8 (229-410)||(28698463-28698645)
chr8 (428-569)||(38608121-38608262)
chr8 (428-569)||(38792904-38793045)
chr8 (229-303)||(13526661-13526735)
chr8 (229-303)||(13616196-13616270)
chr8 (229-290)||(40247288-40247349)
chr8 (231-295)||(30413918-30413982)
chr8 (230-281)||(10443582-10443633)
chr8 (236-303)||(30651958-30652025)
chr8 (231-288)||(9852274-9852331)
chr8 (231-288)||(34648133-34648190)
chr8 (231-295)||(10237358-10237422)
chr8 (231-295)||(19784275-19784339)
chr8 (231-295)||(41099186-41099250)
chr8 (231-295)||(43690644-43690708)
chr8 (231-293)||(15181794-15181856)
chr8 (68-109)||(10650574-10650615)
chr8 (231-288)||(35302591-35302648)
chr8 (231-295)||(7857684-7857748)
chr8 (231-295)||(15227034-15227098)
chr8 (243-295)||(34633319-34633371)
chr8 (231-295)||(41451109-41451173)
chr8 (256-299)||(42433729-42433772)
chr8 (231-295)||(1671803-1671870)
chr8 (256-293)||(4836701-4836738)
chr8 (256-293)||(4842146-4842183)
chr8 (256-293)||(7614096-7614133)
chr8 (256-293)||(8550532-8550569)
chr8 (256-293)||(32987445-32987482)
chr8 (231-295)||(1150021-1150085)
chr8 (232-284)||(44509061-44509113)
[»] chr4 (37 HSPs)
chr4 (229-408)||(43852506-43852684)
chr4 (428-569)||(28731435-28731576)
chr4 (230-303)||(16298924-16298997)
chr4 (231-296)||(25574125-25574190)
chr4 (231-289)||(24686576-24686634)
chr4 (231-295)||(10472501-10472565)
chr4 (231-295)||(13635723-13635787)
chr4 (231-295)||(49492510-49492574)
chr4 (241-295)||(26578187-26578241)
chr4 (231-328)||(38010145-38010243)
chr4 (231-293)||(50563729-50563790)
chr4 (231-295)||(1621879-1621943)
chr4 (246-295)||(6386539-6386590)
chr4 (231-295)||(15051134-15051198)
chr4 (231-295)||(30597703-30597767)
chr4 (231-295)||(36011847-36011911)
chr4 (231-295)||(46672443-46672507)
chr4 (231-295)||(51921263-51921327)
chr4 (231-295)||(53441324-53441388)
chr4 (231-295)||(55765485-55765549)
chr4 (231-293)||(1729615-1729677)
chr4 (243-288)||(30357823-30357868)
chr4 (232-284)||(2848118-2848170)
chr4 (231-295)||(11785978-11786042)
chr4 (231-295)||(11798145-11798209)
chr4 (231-295)||(27865735-27865799)
chr4 (231-295)||(35291546-35291610)
chr4 (231-295)||(49426055-49426119)
chr4 (256-299)||(29826600-29826643)
chr4 (256-299)||(50643771-50643814)
chr4 (230-260)||(48740608-48740638)
chr4 (256-293)||(4168386-4168423)
chr4 (256-293)||(26447412-26447449)
chr4 (256-293)||(36621701-36621738)
chr4 (496-525)||(50643827-50643856)
chr4 (257-293)||(637883-637919)
chr4 (231-295)||(38244948-38245012)
[»] chr2 (22 HSPs)
chr2 (229-395)||(16141973-16142139)
chr2 (314-408)||(40853586-40853680)
chr2 (229-303)||(39548044-39548118)
chr2 (231-296)||(36636934-36636999)
chr2 (231-295)||(5098720-5098784)
chr2 (229-296)||(13081857-13081924)
chr2 (232-287)||(40853685-40853740)
chr2 (231-295)||(25995290-25995354)
chr2 (231-295)||(8149835-8149899)
chr2 (231-295)||(8154459-8154523)
chr2 (231-293)||(4281788-4281850)
chr2 (231-295)||(1292177-1292241)
chr2 (231-295)||(15016564-15016628)
chr2 (232-284)||(24024633-24024685)
chr2 (231-295)||(39355039-39355103)
chr2 (231-295)||(7487252-7487316)
chr2 (231-295)||(9143589-9143653)
chr2 (231-295)||(34464715-34464779)
chr2 (231-289)||(2263577-2263635)
chr2 (256-293)||(18298111-18298148)
chr2 (231-288)||(18762871-18762928)
chr2 (231-288)||(41346045-41346102)
[»] chr6 (13 HSPs)
chr6 (229-303)||(16968013-16968087)
chr6 (230-303)||(4338610-4338683)
chr6 (232-284)||(27079939-27079991)
chr6 (231-293)||(18611192-18611254)
chr6 (231-281)||(32556348-32556398)
chr6 (231-295)||(31216666-31216730)
chr6 (229-295)||(6900805-6900871)
chr6 (231-288)||(30908656-30908713)
chr6 (231-295)||(1449546-1449610)
chr6 (231-295)||(1536894-1536958)
chr6 (231-295)||(7089086-7089150)
chr6 (231-295)||(34870084-34870148)
chr6 (256-293)||(35119263-35119300)
[»] chr5 (21 HSPs)
chr5 (231-295)||(33868159-33868223)
chr5 (231-293)||(16668794-16668856)
chr5 (231-293)||(18465556-18465618)
chr5 (232-292)||(4674965-4675025)
chr5 (231-295)||(16552637-16552701)
chr5 (231-284)||(39056461-39056514)
chr5 (232-284)||(15913140-15913192)
chr5 (231-295)||(26637835-26637899)
chr5 (68-109)||(15024333-15024374)
chr5 (232-284)||(7183142-7183194)
chr5 (231-295)||(13552987-13553051)
chr5 (231-295)||(14940354-14940418)
chr5 (231-295)||(15416668-15416732)
chr5 (231-295)||(30783439-30783503)
chr5 (231-295)||(3884033-3884097)
chr5 (231-295)||(14394472-14394536)
chr5 (229-284)||(6054367-6054422)
chr5 (256-293)||(13362798-13362835)
chr5 (256-293)||(25017217-25017254)
chr5 (257-293)||(34329156-34329192)
chr5 (231-295)||(37456684-37456748)
[»] scaffold0006 (2 HSPs)
scaffold0006 (231-284)||(209330-209383)
scaffold0006 (235-284)||(171513-171562)
[»] scaffold0069 (1 HSPs)
scaffold0069 (235-284)||(51367-51416)
[»] scaffold0460 (1 HSPs)
scaffold0460 (235-284)||(1612-1661)
[»] scaffold0571 (1 HSPs)
scaffold0571 (231-295)||(674-738)
[»] scaffold0045 (1 HSPs)
scaffold0045 (231-295)||(33688-33752)
[»] scaffold0002 (1 HSPs)
scaffold0002 (231-281)||(450206-450256)
[»] scaffold0012 (1 HSPs)
scaffold0012 (231-284)||(119206-119259)
[»] scaffold0717 (1 HSPs)
scaffold0717 (232-284)||(7351-7403)
[»] scaffold0581 (1 HSPs)
scaffold0581 (231-295)||(8419-8483)
[»] scaffold0238 (1 HSPs)
scaffold0238 (256-295)||(25230-25269)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 199 - 569
Target Start/End: Original strand, 34875461 - 34875831
Alignment:
Q  199 gtgcttttgtgtgtgggtgtctaaatgagagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgat 298  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  34875461 gtgcttttgtgtgtgggtgtctaaatgagggcaaagttattatgcataagccatttccttatgcaccctgcataaacacttcacaaccatcagatttgat 34875560  T
Q  299 cgcactctcaatatctgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacg 398  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  34875561 cgcactctcaatatctgattgcacacacgcagaagctcatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacgtgatttatccg 34875660  T
Q  399 gacatgttcacgacattacttctttgtcattcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgc 498  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  34875661 gacaggttcacgacattacttctttgtcgttcttctctcacactgcattacatccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgc 34875760  T
Q  499 tccgtcgctctccgacgctgcaaccaccacttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34875761 tccgtcactctccgacgctgcaaccaccacttcccctgcttggaccggtcctttcactatttttgctccct 34875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 234 - 412
Target Start/End: Complemental strand, 39007708 - 39007530
Alignment:
Q  234 gttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcagaag 333  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||||||||||||||||    
T  39007708 gttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcatatttgattgcactttcacaatctgatcgcacacacgcagaag 39007609  T
Q  334 ctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 412  Q
    ||||| ||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||| ||| || |||||||||    
T  39007608 ctcatcgtagctccgacaccgacgtgattctcacccttgctcgccgctctgacgtgatttatccggccaggttcacgac 39007530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 34875306 - 34875386
Alignment:
Q  29 cccctacgtacggaaagaagaaaacatgatgttcatctcggaaaatacttaattgggtacaagggtttgagcacttggttt 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  34875306 cccctacgtacggaaagaagaaaacatgatgttcatcccggaaaatacttaattgggtagaagggtttgagcacttggttt 34875386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 46346778 - 46346719
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 290  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46346778 aaagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaaccatca 46346719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 6797447 - 6797394
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6797447 aaagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaa 6797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 44141313 - 44141249
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  44141313 aaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 44141249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 5757390 - 5757452
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||    
T  5757390 aaagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaaccatcagat 5757452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 27335690 - 27335629
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27335690 aaagttattataaataagtcattttcttatgca-cctgcataaacacttcacaaccatcagat 27335629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16933306 - 16933242
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  16933306 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16933242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16938689 - 16938625
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  16938689 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 20000736 - 20000672
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  20000736 aaagttatggtgcataagtcatttacttatgcaccgtgcataaacacatcacaaccatcagattt 20000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 763701 - 763765
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  763701 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacgtcacaaccatcagattt 763765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 11732709 - 11732645
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||||||||||||   |||||||||||||||||||||| ||||||    
T  11732709 aaagttatggtgcataagccattttcttatgcactgtgcataaacacttcacaaccattagattt 11732645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 30884284 - 30884220
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  30884284 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30884220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 31660073 - 31660137
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  31660073 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31660137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 41911171 - 41911107
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  41911171 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41911107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 46358524 - 46358588
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46358524 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46358588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 24359875 - 24359932
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  24359875 aaagttatggtgcataagtcatttccttatgcaccgtgcatcaacacttcacaaccat 24359932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 45402932 - 45402879
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||||||||||| |||| |||||||| || |||||||||||| ||||    
T  45402932 aaagttattatgcataagttatttccttatgcacccagcataaacactttacaa 45402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 47340150 - 47340215
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcat-aaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| ||||||||||||| | ||||| |||||| |||||||||||||||||    
T  47340150 aaagttatggtgcataagttattttcttatgcaccgtgcataaaacacatcacaaccatcagattt 47340215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 23709315 - 23709352
Alignment:
Q  68 ggaaaatacttaattgggtacaagggtttgagcacttg 105  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  23709315 ggaaaatatttaattgggcacaagggtttgagcacttg 23709352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 25778863 - 25778908
Alignment:
Q  254 ttcttatgcatcctgcataaacacttcacaaccatcagatttgatc 299  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||    
T  25778863 ttcttatgcactgtgcataagcacttcacaaccatcagatttgatc 25778908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 296
Target Start/End: Complemental strand, 32090613 - 32090584
Alignment:
Q  267 tgcataaacacttcacaaccatcagatttg 296  Q
    ||||||||||||||||||||||||||||||    
T  32090613 tgcataaacacttcacaaccatcagatttg 32090584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 35736963 - 35737016
Alignment:
Q  242 gcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  35736963 gcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 35737016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46024055 - 46024092
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  46024055 cttatgcaccgtgcataaacacttcacaaccatcagat 46024092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 230 - 569
Target Start/End: Complemental strand, 31529728 - 31529389
Alignment:
Q  230 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgca 329  Q
    ||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  31529728 caaagttattatgcataagccatttccttatgcaccatgcataaacacttcacaaccatcagatttgatcgcactctcacaatctgatcgcacacacgca 31529629  T
Q  330 gaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgacattacttctttgtcatt 429  Q
     || ||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||| ||    
T  31529628 taaactcatcgtagctccgacgtcgacatgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacgacattacttctttgtcgtt 31529529  T
Q  430 cttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccaccact 529  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  31529528 cttctctcacactgcattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccatcgctctccgacgctgcaaccaccact 31529429  T
Q  530 tcccctgcttggactggtcctttcactatttttgctccct 569  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  31529428 tcccctgcttggaccggtcctttcactattttcgctccct 31529389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 226 - 569
Target Start/End: Complemental strand, 51801800 - 51801457
Alignment:
Q  226 agagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacaca 325  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||   ||||||||||||||    
T  51801800 agagcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagacttgatcgcgctctcacattctgatcgcacaca 51801701  T
Q  326 cgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgacattacttctttgt 425  Q
    ||||||||||||| |||||||||| | |||| |||||||||||||||||| | || || ||||||||||| ||  || |||||||||||||||| |||||    
T  51801700 cgcagaagctcatcgtagctccgacggcgacgtgattctcacccttgctcactgcaccgacgtgatttatccgaccaggttcacgacattacttatttgt 51801601  T
Q  426 cattcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccac 525  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51801600 cgttcttctctcacactgcattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccac 51801501  T
Q  526 cacttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  51801500 cacttcccctgcttggaccggtcctttcactattttcgctccct 51801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 231 - 409
Target Start/End: Original strand, 2741040 - 2741215
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 330  Q
    ||||||||||||||||||||||||  ||||| |  ||||||||||| ||||||| ||| ||||||   ||||||||||  ||||||||||||||||||||    
T  2741040 aaagttattatgcataagtcatttctttatgtactctgcataaacatttcacaatcattagattt---cgcactctcacaatctgatcgcacacacgcag 2741136  T
Q  331 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcac 409  Q
    |||||||| |||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||| || ||||||    
T  2741137 aagctcatcgtagctccgacgccgacgtgattctcatccttgctcgccgctccgacgtgatttatccggccaggttcac 2741215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 33097405 - 33097475
Alignment:
Q  227 gagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttga 297  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  33097405 gagcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttga 33097475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 44688674 - 44688601
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgca 302  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  44688674 gcaaagttatcatgcataagtcatttccttatgcacgctgcataaacacttcacaaccatcagatttgatcgca 44688601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 28323288 - 28323177
Alignment:
Q  298 tcgcactctcaatatctgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatac 397  Q
    |||||||||||  |||||||| |||||| |||||||||||| ||||||| || |||||| ||||| |||||||||||||||||| | ||||||||||| |    
T  28323288 tcgcactctcacaatctgatcacacacatgcagaagctcatcgtagctctgacgccgacgtgattttcacccttgctcgccgcttcgacgtgatttatcc 28323189  T
Q  398 ggacatgttcac 409  Q
    || || ||||||    
T  28323188 ggccaggttcac 28323177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 44260520 - 44260586
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  44260520 gcaaagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcagattt 44260586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 37639345 - 37639407
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  37639345 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 37639407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 28323394 - 28323329
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 296  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||    
T  28323394 aaagttattatgcataagtcatttttttatgcaccctccataaacactacacaaccatcagatttg 28323329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 35198243 - 35198181
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||    
T  35198243 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacagccatcagat 35198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 20372213 - 20372262
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20372213 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 20372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 51420349 - 51420412
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||    
T  51420349 aaagttattatgcataagtcaattctttatgcatcctgcataaaca-ttcacaaccatcagattt 51420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 34369674 - 34369728
Alignment:
Q  241 tgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  34369674 tgcataagccattttcttatgcaccgtgcataaacacttcacaaccatcagattt 34369728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 13590471 - 13590524
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  13590471 aaagttattatgcataagtcatttccttatgcaccctgcataaacactttacaa 13590524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 11421598 - 11421662
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||| |||||| |||||||| | |||||||||||||||||||||||||||||    
T  11421598 aaagttatggtgcataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagattt 11421662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 49936999 - 49936935
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  49936999 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49936935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 50351807 - 50351871
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  50351807 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 50351871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 5077510 - 5077457
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||||||| |||||||  ||||||||| ||||||||||    
T  5077510 aaagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaa 5077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 13673899 - 13673948
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  13673899 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 13673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 21256834 - 21256777
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||| |||||||||||||| | ||||||||||||||||||||||    
T  21256834 aaagttatggtgcataagccattttcttatgcaccgtgcataaacacttcacaaccat 21256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 23921935 - 23921871
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgc 320  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| ||||||| |  ||||||||||    
T  23921935 cttatgcatcgtgcataagcacttcataaccatcagatttgattgcactcttacaatctgatcgc 23921871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 24635930 - 24635994
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  24635930 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 24635994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30788352 - 30788414
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||| ||||||||  ||||||  ||| ||||||||||||| ||||    
T  30788352 aaagttattatgcataagtcatttccttatgcagtctgcat--acatttcacaaccatcatattt 30788414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 4097970 - 4097906
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||  |||| |||||||| | |||||||||||||||||||||||| ||||    
T  4097970 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacttcacaaccatcaaattt 4097906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 18618839 - 18618903
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||| | |||| |||||||| | ||||||||||| |||||||||||||||||    
T  18618839 aaagttatggtgcataaattatttccttatgcaccgtgcataaacacatcacaaccatcagattt 18618903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 19897822 - 19897758
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||  |||||||||||||||||    
T  19897822 aaagttatggtgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 19897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 20434784 - 20434720
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||| ||||||    
T  20434784 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccattagattt 20434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 23175584 - 23175520
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||  | |||||||||||||||||||||||| ||||    
T  23175584 aaagttatggtgcataagccatttccttatgcgccgtgcataaacacttcacaaccatcaaattt 23175520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 25889090 - 25889026
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  25889090 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 25889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 28375468 - 28375532
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| ||||  ||||||| | ||||||||||| |||||||||||||||||    
T  28375468 aaagttatggtgcataagttatttctttatgcaccgtgcataaacacatcacaaccatcagattt 28375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 43452546 - 43452610
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| ||||||| |||||||||    
T  43452546 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaactatcagattt 43452610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 48762393 - 48762329
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||| ||||||    
T  48762393 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccattagattt 48762329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 18056812 - 18056849
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  18056812 cttatgcaccgtgcataaacacttcacaaccatcagat 18056849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 6314119 - 6314183
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| ||||| |||||| ||||    
T  6314119 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacagccatcaaattt 6314183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 16975970 - 16976022
Alignment:
Q  243 cataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||| |||| |||||||| | || |||||||| |||||||||||||||||    
T  16975970 cataagttatttccttatgcaccgtgtataaacacatcacaaccatcagattt 16976022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 53594970 - 53595153
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 328  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  53594970 gcaaagttattatgcataagccattttcttatgcaccctgcataaacacttcacaaccatcagatttgatcgcactctcacaatctgatcgcacacacgc 53595069  T
Q  329 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 412  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||||    
T  53595070 agaagctaatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacgac 53595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 47728392 - 47728456
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47728392 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaccatcagattt 47728456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 37319523 - 37319458
Alignment:
Q  230 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  37319523 caaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacattcatcagattt 37319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 51682064 - 51682000
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  51682064 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcgcaaccatcagattt 51682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 23699331 - 23699390
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 290  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23699331 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 23717786 - 23717845
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 290  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23717786 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23717845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 23736242 - 23736301
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 290  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23736242 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23736301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 32232995 - 32233048
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  32232995 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 32233048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 23755289 - 23755344
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaacc 286  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  23755289 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaacc 23755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 26662600 - 26662536
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||| |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  26662600 aaagttattgtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 26662536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 33414075 - 33414011
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  33414075 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33414011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 39195172 - 39195105
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 296  Q
    |||||||||||||||||||||||||| || ||||| ||||||| ||||||| | |||||||| |||||    
T  39195172 gcaaagttattatgcataagtcatttcctcatgcaccctgcatgaacactttataaccatcaaatttg 39195105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 28300010 - 28299952
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||||| |||||| | | ||||||||||||||||||| |||||||    
T  28300010 ttattatgcataagtcatttccttatgtaccatgcataaacacttcacaactatcagat 28299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3475469 - 3475405
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  3475469 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 3475405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 9106271 - 9106335
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||||||||    
T  9106271 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 9106335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 19284675 - 19284739
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  19284675 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19284739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 46237820 - 46237756
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46237820 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 47335036 - 47335100
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  47335036 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 47335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 34563409 - 34563352
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||| |||||||||||||| | |||||||||| |||||||||||    
T  34563409 aaagttatggtgcataagccattttcttatgcaccgtgcataaacatttcacaaccat 34563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 41192412 - 41192355
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||||||||| |||||||| | | ||||||||||||||||||||    
T  41192412 aaagttatggtgcataagtcatttccttatgcaccgtacataaacacttcacaaccat 41192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 51846842 - 51846785
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||||||||||||||    
T  51846842 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacttcacaaccat 51846785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 2941988 - 2941924
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||| | | ||||||||||| |||||||||||||||||    
T  2941988 aaagttatggtgcataagttatttccttatgtaccgtgcataaacacatcacaaccatcagattt 2941924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 9596042 - 9595978
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  9596042 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 9595978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 10986356 - 10986420
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| ||| |||||| |||| |||||||| | ||||||||||| ||| |||||||||||||    
T  10986356 aaagttatgatgtataagttatttccttatgcaccgtgcataaacacatcataaccatcagattt 10986420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 30947973 - 30947909
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||| ||||| ||||    
T  30947973 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaatcatcaaattt 30947909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 41568836 - 41568888
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || |||||||| | |||||||| |||||||||    
T  41568836 aagttattatgcataagtcaattccttatgcaccatgcataaatacttcacaa 41568888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 54379167 - 54379231
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  54379167 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 54379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 19385352 - 19385313
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  19385352 cttatgcaccgtgcataaacacttcacaaccatcagattt 19385313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 51362475 - 51362436
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  51362475 cttatgcaccgtgcataaacacttcacaaccatcagattt 51362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 50754034 - 50754071
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  50754034 cttatgcaccgtgcataaacacttcacaaccatcagat 50754071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 52987687 - 52987650
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  52987687 cttatgcaccgtgcataaacacttcacaaccatcagat 52987650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 6097746 - 6097682
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| ||| ||| |||||||||    
T  6097746 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcataactatcagattt 6097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 231 - 412
Target Start/End: Original strand, 12355426 - 12355607
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 330  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  12355426 aaagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaaccattagatctgatcgcactctcacaatctgatcgcacacacgcag 12355525  T
Q  331 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 412  Q
    |||||||| ||||||||    ||||| |||||||||||||||||||||||||| ||||||||||| ||  || |||||||||    
T  12355526 aagctcatcgtagctccatcaccgacgtgattctcacccttgctcgccgctccgacgtgatttatccgtccaggttcacgac 12355607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 428 - 569
Target Start/End: Complemental strand, 38122002 - 38121861
Alignment:
Q  428 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 527  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38122002 ttcttctctcaaactgcattacttccaccgatcttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccacca 38121903  T
Q  528 cttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  38121902 cttcccctgcttggaccggtcctttcaccattttcgctccct 38121861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 231 - 410
Target Start/End: Original strand, 2522871 - 2523050
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 330  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||  |||||||||||||||||||  ||||||||||||||||||||    
T  2522871 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaatcaatagatttgatcgcactctcacaatctgatcgcacacacgcag 2522970  T
Q  331 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacg 410  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||||||||||  ||||||| || ||| || |||||||    
T  2522971 aagctcatcgtagctccgacgccggcgtgattctcacccttgctcgccgctccggcgtgattaatccggccaggttcacg 2523050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 229 - 410
Target Start/End: Complemental strand, 28698645 - 28698463
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcat-aaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacg 327  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||  || |||||||||||| |    
T  28698645 gcaaagttattatgcataagccattttcttatgcaccctgcattaaacatttcacaaccatcagatttgatcgcactctcacaatttgatcgcacacatg 28698546  T
Q  328 cagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacg 410  Q
    ||||||||||| ||||||| || |  ||| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||    
T  28698545 cagaagctcatcgtagctctgacgttgacgtgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacg 28698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 428 - 569
Target Start/End: Original strand, 38608121 - 38608262
Alignment:
Q  428 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 527  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||||||     
T  38608121 ttcttctctcacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccg 38608220  T
Q  528 cttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    ||||| |||||||||| |||||||  || ||||| |||||||    
T  38608221 cttcctctgcttggaccggtccttctaccattttcgctccct 38608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 428 - 569
Target Start/End: Original strand, 38792904 - 38793045
Alignment:
Q  428 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 527  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||||||     
T  38792904 ttcttctctcacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccg 38793003  T
Q  528 cttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    ||||| |||||||||| |||||||  || ||||| |||||||    
T  38793004 cttcctctgcttggaccggtccttctaccattttcgctccct 38793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 13526735 - 13526661
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    |||||||||||||||||||| ||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  13526735 gcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcac 13526661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 13616270 - 13616196
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    |||||||||||||||||||| ||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  13616270 gcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcac 13616196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 40247349 - 40247288
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 290  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40247349 gcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 40247288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30413918 - 30413982
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  30413918 aaagttatgctgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30413982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 10443633 - 10443582
Alignment:
Q  230 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 281  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  10443633 caaagttattatgcataagccatttccttatgcaccctgcataaacacttca 10443582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 30651958 - 30652025
Alignment:
Q  236 tattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    ||||||||||||   |||| |||||||| ||||||||||||||||||||||| || ||||||||||||    
T  30651958 tattatgcataatctatttccttatgcaccctgcataaacacttcacaaccagcaaatttgatcgcac 30652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 9852274 - 9852331
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  9852274 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 9852331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 34648190 - 34648133
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  34648190 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 34648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 10237358 - 10237422
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  10237358 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 10237422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 19784275 - 19784339
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  19784275 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19784339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 41099186 - 41099250
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  41099186 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41099250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 43690644 - 43690708
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  43690644 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 43690708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 15181794 - 15181856
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||    ||| |||||||| |||||||||||||||||||| ||||||||    
T  15181794 aaagttattatgcataatatgtttccttatgcaccctgcataaacacttcacaagcatcagat 15181856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 10650615 - 10650574
Alignment:
Q  68 ggaaaatacttaattgggtacaagggtttgagcacttggttt 109  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  10650615 ggaaaatacttaattgggcacaaggttttgagcacttggttt 10650574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 35302648 - 35302591
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||| | |||||||||||||| | ||||||||||||||||||||||    
T  35302648 aaagttatggtgcataggacattttcttatgcaccgtgcataaacacttcacaaccat 35302591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 7857684 - 7857748
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| |||||||||||||  | ||||||||||| |||||| ||||||||||    
T  7857684 aaagttatggtgcataagccattttcttatgcgccgtgcataaacacatcacaatcatcagattt 7857748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 15227034 - 15227098
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| | |||||||||||||||    
T  15227034 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacattacaaccatcagattt 15227098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 34633371 - 34633319
Alignment:
Q  243 cataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  34633371 cataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 34633319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 41451109 - 41451173
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||| ||||||||||    
T  41451109 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagattt 41451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 42433729 - 42433772
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 299  Q
    |||||||| | ||||||| |||||||||||||||||||||||||    
T  42433729 cttatgcaccgtgcataagcacttcacaaccatcagatttgatc 42433772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 1671803 - 1671870
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaa---cacttcacaaccatcagattt 295  Q
    |||||||||||||||||  |||||||||||||| | ||| ||||   |||||||||| ||||||||||    
T  1671803 aaagttattatgcataaaacattttcttatgcaccatgcttaaacatcacttcacaatcatcagattt 1671870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 4836738 - 4836701
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4836738 cttatgcaccgtgcataaacacttcacaaccatcagat 4836701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 4842183 - 4842146
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4842183 cttatgcaccgtgcataaacacttcacaaccatcagat 4842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 7614096 - 7614133
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  7614096 cttatgcaccatgcataaacacttcacaaccatcagat 7614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 8550532 - 8550569
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  8550532 cttatgcaccgtgcataaacacttcacaaccatcagat 8550569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 32987482 - 32987445
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  32987482 cttatgcaccgtgcataaacacttcacaaccatcagat 32987445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 1150085 - 1150021
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||  |||||||| | ||||||||||| |||||||||||| ||||    
T  1150085 aaagttatggtgcataagttattcccttatgcaccgtgcataaacacatcacaaccatcatattt 1150021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 44509113 - 44509061
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || | |||||| |||| | |||||||||||||    
T  44509113 aagttattatgcataagtcagttccatatgcaccctgtagaaacacttcacaa 44509061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 43852684 - 43852506
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 328  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||||| || |||||||||||||||||||||||  ||||||||| |||||| |    
T  43852684 gcaaagttattatgcataagtcattttcttatgca-catgcataaatacttcataatcatcagatttgatcgcactctcacaatctgatcgaacacacac 43852586  T
Q  329 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttca 408  Q
    |||||||||| |||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||| ||| || |||||    
T  43852585 agaagctcatcgtagctccgacgctgacgtgattctcacccttgttcgccgctccgacgtgatttatccggccaggttca 43852506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 428 - 569
Target Start/End: Complemental strand, 28731576 - 28731435
Alignment:
Q  428 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 527  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||    
T  28731576 ttcttctctcacactgcattacttccacctatcttgtctcatctcggttttcacgagcttgcaaccgccgctcctacgctctctgacgctgcaaccacca 28731477  T
Q  528 cttcccctgcttggactggtcctttcactatttttgctccct 569  Q
    |||||| ||||||||| ||||||||||| ||||| |||||||    
T  28731476 cttcccttgcttggaccggtcctttcaccattttcgctccct 28731435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 16298924 - 16298997
Alignment:
Q  230 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  16298924 caaagttattatgcataagtcatttccttatgcaccctgcataatcacttcacaaccatcagatttgatcgcac 16298997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 25574190 - 25574125
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 296  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  25574190 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttg 25574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 24686576 - 24686634
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatc 289  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  24686576 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatc 24686634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 10472501 - 10472565
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | |||||||||| ||||||||||||||||||    
T  10472501 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacatttcacaaccatcagattt 10472565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 13635787 - 13635723
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  13635787 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 49492574 - 49492510
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  49492574 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49492510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 26578241 - 26578187
Alignment:
Q  241 tgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| |||||  ||||||||| |||||||||||||||||||||||||||||    
T  26578241 tgcataagccatttctttatgcatcgtgcataaacacttcacaaccatcagattt 26578187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 38010145 - 38010243
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt-gatcgcactctcaatatctgatcgcacacacgc 328  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||  |||||   || |||| |||  ||||||||||||||||||    
T  38010145 aaagttatggtgcataagtcatttccttatgcaccatgcataaacacttcacaaccatttgatttccttcacactttcacaatctgatcgcacacacgc 38010243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 50563790 - 50563729
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    ||||||||||||||||||  |||| | |||||| |||||||||||||||||||||||||||||    
T  50563790 aaagttattatgcataagatattt-catatgcaccctgcataaacacttcacaaccatcagat 50563729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 1621879 - 1621943
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  1621879 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1621943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 6386590 - 6386539
Alignment:
Q  246 aagtcattttcttatgc--atcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  6386590 aagtcattttcttatgcgcaccctgcataaacacttcacaaccatcagattt 6386539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 15051198 - 15051134
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15051198 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15051134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30597703 - 30597767
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  30597703 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30597767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 36011847 - 36011911
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  36011847 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 36011911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 46672443 - 46672507
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46672443 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 51921327 - 51921263
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  51921327 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 51921263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 53441324 - 53441388
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||||    
T  53441324 aaagttatggtgcataagttatttccttatgcatcgtgcataaacacatcacaaccatcaaattt 53441388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 55765485 - 55765549
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||||||||    
T  55765485 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 55765549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 1729677 - 1729615
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    ||||||||  ||||||||||||||  |||| || | |||||||||||||||||||||||||||    
T  1729677 aaagttatggtgcataagtcatttctttatacaccgtgcataaacacttcacaaccatcagat 1729615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 30357823 - 30357868
Alignment:
Q  243 cataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30357868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 2848170 - 2848118
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||| ||||    
T  2848170 aagttattatgcataagtcagttccttatgcaccctgcataaatactttacaa 2848118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 11785978 - 11786042
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||  ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  11785978 aaagttatggtgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11786042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 11798145 - 11798209
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||  ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  11798145 aaagttatggtgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11798209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 27865799 - 27865735
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| | |||||| | ||||||||||| |||||||||||||||||    
T  27865799 aaagttatagtgcataagccatttccatatgcaccgtgcataaacacatcacaaccatcagattt 27865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 35291610 - 35291546
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||| ||||||    
T  35291610 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccataagattt 35291546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 49426119 - 49426055
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  49426119 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcaaattt 49426055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 29826643 - 29826600
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 299  Q
    |||||||| | ||||||| |||||||||||||||||||||||||    
T  29826643 cttatgcaccgtgcataagcacttcacaaccatcagatttgatc 29826600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 50643771 - 50643814
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 299  Q
    |||||||| | ||||||||||||||| |||||||||||||||||    
T  50643771 cttatgcaccgtgcataaacacttcataaccatcagatttgatc 50643814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 48740608 - 48740638
Alignment:
Q  230 caaagttattatgcataagtcattttcttat 260  Q
    |||||||||||||||||||||||||||||||    
T  48740608 caaagttattatgcataagtcattttcttat 48740638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 4168386 - 4168423
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4168386 cttatgcaccgtgcataaacacttcacaaccatcagat 4168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 26447449 - 26447412
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  26447449 cttatgcaccgtgcataaacacttcacaaccatcagat 26447412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 36621738 - 36621701
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  36621738 cttatgcaccgtgcataaacacttcacaaccatcagat 36621701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 50643827 - 50643856
Alignment:
Q  496 cgctccgtcgctctccgacgctgcaaccac 525  Q
    ||||||||||||||||||||||||||||||    
T  50643827 cgctccgtcgctctccgacgctgcaaccac 50643856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 637883 - 637919
Alignment:
Q  257 ttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    ||||||| | |||||||||||||||||||||||||||    
T  637883 ttatgcaccgtgcataaacacttcacaaccatcagat 637919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 38244948 - 38245012
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| ||| ||||   | |||||||||||||||||||||||||||    
T  38244948 aaagttatggtgcataagccatttccttctgcacagttcataaacacttcacaaccatcagattt 38245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 229 - 395
Target Start/End: Complemental strand, 16142139 - 16141973
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 328  Q
    ||||| |||||||||| ||| ||||| ||||||||  ||||||||||||||||||||||| |||||||||||||| ||||  || |||| ||||||| ||    
T  16142139 gcaaatttattatgcacaagccatttccttatgcacgctgcataaacacttcacaaccattagatttgatcgcacactcacaatttgattgcacacatgc 16142040  T
Q  329 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttat 395  Q
     ||||||||| ||||||| || || ||| ||||||||||||||||| ||| |||| |||||||||||    
T  16142039 ggaagctcatggtagctctgaggctgacgtgattctcacccttgcttgccactccgacgtgatttat 16141973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 40853680 - 40853586
Alignment:
Q  314 tgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttca 408  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| || |||||||| ||| || |||||    
T  40853680 tgatcgcacacacgcagaagctcatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacctgatttatccggccaggttca 40853586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 39548044 - 39548118
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39548044 gcaaagttattatacataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaatttgatcgcac 39548118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 36636999 - 36636934
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 296  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  36636999 aaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttg 36636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 5098720 - 5098784
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  5098720 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaattt 5098784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 13081924 - 13081857
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 296  Q
    ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||| ||||||    
T  13081924 gcaaagttattatgcataagtcatttcattatgcaccctacataaacacttcacaaccatctgatttg 13081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 40853740 - 40853685
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaacca 287  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40853740 aagttattatgcataagccatttccttatgcatcctgcataaacacttcacaacca 40853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 25995290 - 25995354
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||    
T  25995290 aaagttattatgcataagacatttccttatgcactctgcataaatacttcacaaccatcagattt 25995354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 8149835 - 8149899
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||    
T  8149835 aaagttatggtgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 8154459 - 8154523
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||    
T  8154459 aaagttatggtgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8154523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 4281850 - 4281788
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| ||||| |||||| |  ||| ||||||||||||||||||||||||    
T  4281850 aaagttattatgcataagacatttccttatgtactctgtataaacacttcacaaccatcagat 4281788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 1292241 - 1292177
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||    
T  1292241 aaagttatggtgcataagttattttcttatgcaccgtacataaacacatcacaaccatcagattt 1292177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 15016628 - 15016564
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15016628 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15016564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 24024685 - 24024633
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||||||||    
T  24024685 aagttattatgcataagtcaattccttatgcaccatgcataaacacttcacaa 24024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 39355039 - 39355103
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  39355039 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 39355103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 7487316 - 7487252
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  7487316 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 7487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 9143589 - 9143653
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||| ||||||||||    
T  9143589 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 9143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 34464715 - 34464779
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||  |||||||||||||||||    
T  34464715 aaagttatggtgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 34464779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 2263577 - 2263635
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatc 289  Q
    ||||||||  |||||||| |||||  ||||||| | |||||||||||||||||||||||    
T  2263577 aaagttatggtgcataagccatttctttatgcaccgtgcataaacacttcacaaccatc 2263635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 18298148 - 18298111
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  18298148 cttatgcaccgtgcataaacacttcacaaccatcagat 18298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 18762871 - 18762928
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| ||||||||||    
T  18762871 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccat 18762928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 41346102 - 41346045
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||| |||||||||||||| | |  |||||||||||||||||||    
T  41346102 aaagttatggtgcataagccattttcttatgcaccgtatataaacacttcacaaccat 41346045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 16968087 - 16968013
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  16968087 gcaacgttattatgcataagccattttcttatgcaccctgcataaacacttcataaccatcaaatttgatcgcac 16968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 4338683 - 4338610
Alignment:
Q  230 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 303  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  4338683 caaagttgttatgcataagccattttcttatgcaccctgcataaacacttcaaaatcatcagatttgatcgcac 4338610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 27079991 - 27079939
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  27079991 aagttattatgcataagtcattttcttatgcaccgtgcataaacacttcacaa 27079939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 18611192 - 18611254
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| |||||  |||||||  ||||||||||||||||||||||||||||    
T  18611192 aaagttattatgcataagacatttctttatgcactctgcataaacacttcacaaccatcagat 18611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 32556348 - 32556398
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 281  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  32556348 aaagttattatgcataagtcattttcttatgcaccctgcataaacaattca 32556398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 31216666 - 31216730
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  31216666 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31216730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 6900805 - 6900871
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  6900805 gcaaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 6900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 30908656 - 30908713
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 288  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  30908656 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 1449546 - 1449610
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  1449546 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1449610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 1536958 - 1536894
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  1536958 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1536894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 7089086 - 7089150
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||| ||||||||||    
T  7089086 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 7089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 34870148 - 34870084
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | || |||||||| |||||||||||||||||    
T  34870148 aaagttatggtgcataagccatttccttatgcaccatgtataaacacatcacaaccatcagattt 34870084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 35119263 - 35119300
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  35119263 cttatgcaccgtgcataaacacttcacaaccatcagat 35119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 33868159 - 33868223
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  33868159 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 33868223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 16668856 - 16668794
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  16668856 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 18465618 - 18465556
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  18465618 aaagttattatgcataagacatttcattatgcatcctgcataaacacttcacaaccatcagat 18465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 4674965 - 4675025
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcaga 292  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4674965 aagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcaga 4675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16552701 - 16552637
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||    
T  16552701 aaagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaaccatcatattt 16552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 39056514 - 39056461
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  39056514 aaagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaa 39056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 15913192 - 15913140
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  15913192 aagttattatgcataagtcagttccttatgcatcctgcataaacactttacaa 15913140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 26637899 - 26637835
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| |||||||||||||| | ||||||||||| |||||||||||||||||    
T  26637899 aaagttatggtgcataagccattttcttatgcaccgtgcataaacacatcacaaccatcagattt 26637835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 15024374 - 15024333
Alignment:
Q  68 ggaaaatacttaattgggtacaagggtttgagcacttggttt 109  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  15024374 ggaaaatacttaattgggcacaagggtttgagcacttggttt 15024333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 7183142 - 7183194
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| || ||||||||  |||||||||||||||||||    
T  7183142 aagttattatgcataagtcagttccttatgcacactgcataaacacttcacaa 7183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 13552987 - 13553051
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  13552987 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13553051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 14940418 - 14940354
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  14940418 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 14940354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 15416668 - 15416732
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15416668 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15416732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30783439 - 30783503
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| || ||||||||||||||    
T  30783439 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcgcaaccatcagattt 30783503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3884097 - 3884033
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||| ||||    
T  3884097 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcaaattt 3884033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 14394472 - 14394536
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||||||| |||| |||||||| | |||||||| || |||||||||||||||||    
T  14394472 aaagttatggtgcataagttatttccttatgcaccgtgcataaatacatcacaaccatcagattt 14394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 6054367 - 6054422
Alignment:
Q  229 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||| |||||||||||||||||||| ||||||||||  |||| || |||||||    
T  6054367 gcaaagtcattatgcataagtcattttcctatgcatcctatataagcatttcacaa 6054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 13362798 - 13362835
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  13362798 cttatgcaccgtgcataaacacttcacaaccatcagat 13362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 25017254 - 25017217
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    |||||||| | |||||||||||||||||||||||||||    
T  25017254 cttatgcaccgtgcataaacacttcacaaccatcagat 25017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 34329156 - 34329192
Alignment:
Q  257 ttatgcatcctgcataaacacttcacaaccatcagat 293  Q
    ||||||| | |||||||||||||||||||||||||||    
T  34329156 ttatgcaccgtgcataaacacttcacaaccatcagat 34329192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 37456684 - 37456748
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  ||||| || ||||| |||||||| | | ||||||||| |||||||||||||||||    
T  37456684 aaagttatggtgcatgagccatttccttatgcaccgtacataaacacatcacaaccatcagattt 37456748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 209330 - 209383
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  209330 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 171513 - 171562
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  171513 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 171562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 51367 - 51416
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51367 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 51416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 1612 - 1661
Alignment:
Q  235 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1612 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 738 - 674
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  738 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 33688 - 33752
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  33688 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 450206 - 450256
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 281  Q
    |||||||||||||||||||||||| ||||| || | |||||||||||||||    
T  450206 aaagttattatgcataagtcatttccttatacaccttgcataaacacttca 450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 119206 - 119259
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    ||||||||||| ||||||||||||   |||||| ||||||||||||||||||||    
T  119206 aaagttattatacataagtcatttctatatgcaccctgcataaacacttcacaa 119259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 7403 - 7351
Alignment:
Q  232 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 284  Q
    |||||||||||||||| |||  | |||||||| ||||||||||||||||||||    
T  7403 aagttattatgcataaatcagatccttatgcaccctgcataaacacttcacaa 7351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 8483 - 8419
Alignment:
Q  231 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    ||||||||  |||||||| ||||| ||||||||   ||||||||||| |||||||||||||||||    
T  8483 aaagttatggtgcataagccatttccttatgcactgtgcataaacacatcacaaccatcagattt 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 25269 - 25230
Alignment:
Q  256 cttatgcatcctgcataaacacttcacaaccatcagattt 295  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  25269 cttatgcaccgtgcataaacacttcacaaccatcagattt 25230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University