View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_5 (Length: 575)
Name: NF19463_low_5
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 298 - 559
Target Start/End: Original strand, 53107746 - 53107995
Alignment:
| Q |
298 |
ttcttttgttcactgtttatttggttttctgatcatcttgaattcctcaagttcctgaaatcaaatatagggaaaaatatcaaccttgcagtctccaaag |
397 |
Q |
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| T |
53107746 |
ttcttttgttcactgtttatttggttttctgatcatcttgaattcctcaagttcctgaaatcaaatatagggaaaaatatcaaccttgcagtctccaagg |
53107845 |
T |
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| Q |
398 |
nnnnnnnntggactgtatatagttaagaagaccaacatgaacaacatatataaacaaacatttttcttcacattaattttcaatgaaaagaaggggaatg |
497 |
Q |
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| T |
53107846 |
aaaaaaaatggactgtatatagttaagaagaccaacatgagcaacatatataaacaa------------acattaattttcaatgaaaagaaggggaatg |
53107933 |
T |
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| Q |
498 |
catgtacaatacaaacctttagttgaaggtacatcttgaggtttcatggcagggaagagaag |
559 |
Q |
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| T |
53107934 |
catgtacaatacaaacctttagttgaaggtacatcttgaggtttcatggcagggaagagaag |
53107995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 53107478 - 53107736
Alignment:
| Q |
11 |
caaaggcacccattgaccataccaatattaacaaattcacctcattgtagnnnnnnncagaaagtagcaatttgaaccagtgatgggttgggt----agc |
106 |
Q |
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| T |
53107478 |
caaaggcacccattgaccataccaatattaacaaattcacctcattgtagaaaaaaacagaaagtagcaatttgaaccagtgaggggttgggtgggtagc |
53107577 |
T |
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| Q |
107 |
tcaactcctttgaacaaagggtaaagcagttgaagatattacgttcaaatccgggtgaagtagtaaatattaatttaacaaaataactactaacctttgt |
206 |
Q |
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| T |
53107578 |
tcaactcctttgaacaaagggaaaagaagttgaagatattacgttcaaatccgggtgaagtagtaaatattaatttaacaaaataactactaacctttgt |
53107677 |
T |
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| Q |
207 |
catttnnnnnnnnnnnnnnnnnctatttgagctaggcttgtgtgcgatgtaagtaactatc |
267 |
Q |
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| T |
53107678 |
catttaaaaaaaaaaaaaaa--ctatttgagctaggcttgtgtgcgatgtaagtaactatc |
53107736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 53125709 - 53125784
Alignment:
| Q |
483 |
aaaagaaggggaatgcatgtacaatacaaacctttagttgaaggtacatcttgaggtttcatggcagggaagagaa |
558 |
Q |
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| T |
53125709 |
aaaagaaggtgaaggcatgtacattacaaacctttagctgaaggtacatcttgaggtttcatggcatggaagagaa |
53125784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 53125585 - 53125638
Alignment:
| Q |
323 |
tttctgatcatcttgaattcctcaagttcctgaaatcaaatatagggaaaaatat |
377 |
Q |
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| T |
53125585 |
tttctgatcatcttgaatttctcaagttcctgaaatc-aatgtagggaaaaatat |
53125638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 559
Target Start/End: Complemental strand, 15841753 - 15841722
Alignment:
| Q |
528 |
acatcttgaggtttcatggcagggaagagaag |
559 |
Q |
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| T |
15841753 |
acatcttgaggtttcatggcagggaagagaag |
15841722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 39735440 - 39735398
Alignment:
| Q |
168 |
agtaaatattaatttaacaaaataactactaacctttgtcatt |
210 |
Q |
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| T |
39735440 |
agtaaatattaatataacaaactaactactaacatttgtcatt |
39735398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 14798263 - 14798221
Alignment:
| Q |
168 |
agtaaatattaatttaacaaaataactactaacctttgtcatt |
210 |
Q |
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| T |
14798263 |
agtaaatattaatctaacaaattaactactaacctttgccatt |
14798221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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