View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19463_low_7 (Length: 533)

Name: NF19463_low_7
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19463_low_7
NF19463_low_7
[»] chr4 (25 HSPs)
chr4 (176-334)||(53935058-53935215)
chr4 (414-521)||(53934869-53934978)
chr4 (19-122)||(53935273-53935382)
chr4 (449-513)||(21069285-21069349)
chr4 (438-521)||(8484894-8484977)
chr4 (434-513)||(4688909-4688989)
chr4 (438-521)||(6102108-6102192)
chr4 (439-514)||(7784321-7784397)
chr4 (434-506)||(35233070-35233142)
chr4 (418-517)||(3666825-3666927)
chr4 (438-504)||(1564844-1564910)
chr4 (177-302)||(23449498-23449623)
chr4 (439-514)||(48653629-48653706)
chr4 (439-514)||(7764209-7764285)
chr4 (438-505)||(27743437-27743504)
chr4 (434-496)||(5122155-5122217)
chr4 (232-326)||(41260530-41260624)
chr4 (434-496)||(45226619-45226681)
chr4 (437-513)||(15724121-15724198)
chr4 (438-490)||(28148017-28148069)
chr4 (188-291)||(48653428-48653531)
chr4 (258-308)||(25686074-25686124)
chr4 (460-505)||(4642683-4642728)
chr4 (451-496)||(35014520-35014565)
chr4 (441-513)||(45983613-45983686)
[»] chr3 (18 HSPs)
chr3 (414-514)||(21562782-21562883)
chr3 (434-513)||(42362991-42363071)
chr3 (434-521)||(27054300-27054387)
chr3 (434-514)||(44651191-44651271)
chr3 (434-513)||(4280516-4280596)
chr3 (417-490)||(22472819-22472894)
chr3 (434-488)||(5640501-5640555)
chr3 (439-517)||(25919032-25919110)
chr3 (434-488)||(50578772-50578826)
chr3 (449-513)||(55467431-55467495)
chr3 (434-508)||(20846708-20846783)
chr3 (449-513)||(37045540-37045605)
chr3 (420-483)||(37656731-37656795)
chr3 (175-274)||(10481125-10481224)
chr3 (434-512)||(52632255-52632334)
chr3 (233-307)||(5640294-5640368)
chr3 (437-513)||(17144510-17144587)
chr3 (231-304)||(4555062-4555135)
[»] chr1 (26 HSPs)
chr1 (417-517)||(25507103-25507205)
chr1 (434-508)||(10847301-10847376)
chr1 (417-508)||(17651979-17652073)
chr1 (440-513)||(18310170-18310244)
chr1 (434-495)||(41751392-41751453)
chr1 (233-326)||(44056154-44056247)
chr1 (440-507)||(8268880-8268948)
chr1 (263-326)||(9330819-9330882)
chr1 (473-517)||(16063079-16063123)
chr1 (449-517)||(25559809-25559877)
chr1 (449-513)||(26344838-26344902)
chr1 (434-513)||(32910144-32910224)
chr1 (233-305)||(39157878-39157950)
chr1 (417-513)||(17989273-17989372)
chr1 (449-496)||(50951827-50951874)
chr1 (436-513)||(382282-382360)
chr1 (434-488)||(11073144-11073198)
chr1 (417-513)||(11537024-11537126)
chr1 (451-512)||(23474895-23474957)
chr1 (417-508)||(35992352-35992446)
chr1 (417-496)||(44055980-44056061)
chr1 (434-496)||(52829055-52829117)
chr1 (417-496)||(9961940-9962021)
chr1 (460-521)||(27350860-27350921)
chr1 (434-513)||(8165317-8165396)
chr1 (449-505)||(52380524-52380580)
[»] chr8 (16 HSPs)
chr8 (438-517)||(13325525-13325604)
chr8 (435-499)||(41346154-41346218)
chr8 (434-514)||(40436665-40436746)
chr8 (449-517)||(1271367-1271435)
chr8 (438-517)||(11219180-11219259)
chr8 (438-513)||(22810970-22811044)
chr8 (434-496)||(9012609-9012671)
chr8 (449-527)||(12193252-12193330)
chr8 (449-527)||(12437680-12437758)
chr8 (434-496)||(28441716-28441778)
chr8 (449-521)||(4785461-4785533)
chr8 (434-505)||(38926207-38926279)
chr8 (438-505)||(24681867-24681934)
chr8 (438-485)||(31477928-31477975)
chr8 (473-508)||(14185685-14185721)
chr8 (464-500)||(30253553-30253589)
[»] chr7 (24 HSPs)
chr7 (437-514)||(22701114-22701191)
chr7 (434-513)||(30855324-30855404)
chr7 (438-513)||(10338586-10338661)
chr7 (438-505)||(11834243-11834310)
chr7 (434-508)||(2734571-2734645)
chr7 (438-512)||(23729602-23729676)
chr7 (440-508)||(26524716-26524785)
chr7 (434-513)||(48643016-48643096)
chr7 (434-513)||(49012278-49012358)
chr7 (434-508)||(32237900-32237975)
chr7 (437-483)||(8118057-8118103)
chr7 (434-496)||(23675624-23675686)
chr7 (434-513)||(22298761-22298840)
chr7 (434-514)||(33434339-33434420)
chr7 (440-507)||(21237553-21237621)
chr7 (437-508)||(46147444-46147516)
chr7 (177-288)||(40849317-40849428)
chr7 (233-307)||(6879666-6879740)
chr7 (178-291)||(7697752-7697865)
chr7 (238-291)||(36550920-36550973)
chr7 (258-307)||(38903265-38903314)
chr7 (445-513)||(7697517-7697585)
chr7 (449-505)||(20334820-20334876)
chr7 (417-496)||(23032928-23033008)
[»] chr5 (26 HSPs)
chr5 (434-496)||(34881094-34881156)
chr5 (414-513)||(7487068-7487170)
chr5 (438-517)||(33792874-33792953)
chr5 (438-512)||(25495320-25495394)
chr5 (417-503)||(40331237-40331326)
chr5 (449-513)||(10090459-10090523)
chr5 (436-508)||(34111545-34111620)
chr5 (434-508)||(2589211-2589287)
chr5 (176-248)||(22747109-22747181)
chr5 (434-508)||(12378856-12378931)
chr5 (434-508)||(14652692-14652767)
chr5 (438-485)||(40692714-40692761)
chr5 (177-307)||(691123-691253)
chr5 (440-508)||(18845751-18845820)
chr5 (449-526)||(34087626-34087703)
chr5 (434-478)||(40109393-40109438)
chr5 (434-513)||(11402826-11402906)
chr5 (177-301)||(18432535-18432659)
chr5 (258-326)||(34880914-34880982)
chr5 (438-512)||(28224639-28224713)
chr5 (414-513)||(36567944-36568046)
chr5 (438-518)||(4414445-4414526)
chr5 (258-307)||(6595372-6595421)
chr5 (188-309)||(40331009-40331129)
chr5 (460-505)||(41455110-41455155)
chr5 (261-309)||(4414658-4414706)
[»] chr6 (12 HSPs)
chr6 (438-513)||(6400051-6400126)
chr6 (434-488)||(13532049-13532103)
chr6 (440-517)||(31945218-31945295)
chr6 (434-508)||(20500794-20500869)
chr6 (450-513)||(22414032-22414095)
chr6 (449-505)||(7169872-7169928)
chr6 (434-508)||(17306595-17306670)
chr6 (440-494)||(4563109-4563163)
chr6 (434-496)||(8064737-8064799)
chr6 (449-483)||(13092255-13092289)
chr6 (258-307)||(13531866-13531915)
chr6 (436-496)||(14940349-14940409)
[»] chr2 (11 HSPs)
chr2 (434-509)||(11377434-11377510)
chr2 (418-496)||(30514697-30514777)
chr2 (417-483)||(15320345-15320414)
chr2 (434-501)||(21734276-21734343)
chr2 (417-495)||(1331241-1331321)
chr2 (434-483)||(10242514-10242563)
chr2 (449-513)||(11678226-11678290)
chr2 (449-513)||(11695704-11695768)
chr2 (449-517)||(5862458-5862526)
chr2 (440-496)||(17762994-17763050)
chr2 (434-486)||(44085744-44085796)
[»] scaffold0001 (1 HSPs)
scaffold0001 (240-326)||(428066-428152)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 53935215 - 53935058
Alignment:
Q  176 tatttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaat 275  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53935215 tatttgatttgaatgtatttggatcatttttatattcatccgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaat 53935116  T
Q  276 tgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactcgaaaaatc 334  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  53935115 tgcaacataag-aaaatatgaattaaacatatgtcacgtgaaccaatactcgaaaaatc 53935058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 414 - 521
Target Start/End: Complemental strand, 53934978 - 53934869
Alignment:
Q  414 gtactacttgaacttttaa--gatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagt 511  Q
    ||||||||||||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  53934978 gtactacttgaacttttagatgatgataaaatcttaatcttttgcctatcttataaaatatgattactttttatccacatttttatttggtctatgtagt 53934879  T
Q  512 tgagaatatt 521  Q
    ||||||||||    
T  53934878 tgagaatatt 53934869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 53935382 - 53935273
Alignment:
Q  19 ttaactctgtttcattttcctggaaattcgagtcc------ccatgctccctttatactatatactactctatacaaatgcatgcaagtgttttgagatc 112  Q
    |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53935382 ttaactctgtttcattttcctggaaattcgagtccgagtccccatgctccctttatactatatactactctatacaactgcatgcaagtgttttgagatc 53935283  T
Q  113 agaatcaatt 122  Q
    ||||||||||    
T  53935282 agaatcaatt 53935273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 21069349 - 21069285
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  21069349 tcttttgcatttcttacataatatgattactttttgtccacattttaatttggtctacgtagttg 21069285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 438 - 521
Target Start/End: Complemental strand, 8484977 - 8484894
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatatt 521  Q
    |||||| ||| |||||||||| ||||| |||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||    
T  8484977 taaaattttagtcttttgcatttcttataaaatatgattactttttgtccatgttttaatttggtctacgtatttgagaatatt 8484894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 4688989 - 4688909
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||| |||||||||||||| ||||| | ||||||||||||||||||| |||||||| ||||||| ||||| ||||    
T  4688989 atgataaaattttaatcttttgcatttcttatagaatatgattactttttgtctacatttttaatttggtatatgttgttg 4688909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 521
Target Start/End: Complemental strand, 6102192 - 6102108
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacat-ttttatttggtctatgtagttgagaatatt 521  Q
    |||||||||| | |||||||| || ||||||||| |||||||| |||||||||| |||||||| |||||||| |||| |||||||    
T  6102192 taaaatcttagttttttgcatttcatacaaaataggattacttattgtccacattttttatttagtctatgtggttgggaatatt 6102108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 514
Target Start/End: Original strand, 7784321 - 7784397
Alignment:
Q  439 aaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttga 514  Q
    ||||||||| ||| || ||| |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  7784321 aaaatcttagtctattacatttcttacaaaatatgattactttttgtccatgtttttaatttggtctatgttgttga 7784397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 35233070 - 35233142
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctat 506  Q
    ||||||||||||||||||||| ||| ||||||| ||||  ||||| |||||||||| |||| |||||||||||    
T  35233070 atgataaaatcttaatcttttacatttcttacataataaaattaccttttgtccacgttttaatttggtctat 35233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 517
Target Start/End: Original strand, 3666825 - 3666927
Alignment:
Q  418 tacttgaacttttaag--atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttga 514  Q
    |||||||||||||||   |||||||||||||| | |||||||  ||| | | |||||||||||||||||||||| ||||| ||||||||||||| ||| |    
T  3666825 tacttgaacttttaaagaatgataaaatcttagtgttttgcacttctcatagaatatgattactttttgtccacctttttaatttggtctatgttgttaa 3666924  T
Q  515 gaa 517  Q
    |||    
T  3666925 gaa 3666927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 504
Target Start/End: Original strand, 1564844 - 1564910
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtct 504  Q
    |||||| ||| ||||||| || |||||||||||| ||||| |||||||||||||||| |||||||||    
T  1564844 taaaattttactcttttgtatttcttacaaaataggattattttttgtccacattttaatttggtct 1564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 23449498 - 23449623
Alignment:
Q  177 atttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaatt 276  Q
    |||||||||| ||||||| ||||||||||| || ||| | ||||||||||  |   ||||  ||||| |||||| |||   ||||||||||||||||||     
T  23449498 atttgatttggatgtattcggatcatttttttactcaaccgcatggtttggttcagtttgcagttttgattttaccaaccgaaccaaaccaaatcaaatc 23449597  T
Q  277 gcaacataagaaaaatatgaattaaa 302  Q
    |||| |||||||||| || |||||||    
T  23449598 gcaatataagaaaaacattaattaaa 23449623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 514
Target Start/End: Original strand, 48653629 - 48653706
Alignment:
Q  439 aaaatcttaatcttttgcatatcttacaaaatatgattac-tttttgtccacattttt-atttggtctatgtagttga 514  Q
    ||||||||| ||||||| || ||| |||||||| |||||| ||||||||||| ||||| |||||||||||||||||||    
T  48653629 aaaatcttagtcttttgtatttctaacaaaataagattacttttttgtccacgtttttaatttggtctatgtagttga 48653706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 514
Target Start/End: Original strand, 7764209 - 7764285
Alignment:
Q  439 aaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttga 514  Q
    ||||||||| |||||| ||| ||||| ||||||||||||||||||| |||| ||||| |||||||||| || |||||    
T  7764209 aaaatcttagtcttttacatttcttataaaatatgattactttttgaccacgtttttaatttggtctaagttgttga 7764285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 505
Target Start/End: Complemental strand, 27743504 - 27743437
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    |||||| ||||||||||| || |||||||||||| ||||||||||||||| | ||| ||||| |||||    
T  27743504 taaaattttaatcttttgtatttcttacaaaataggattactttttgtccgcgtttatatttagtcta 27743437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 5122155 - 5122217
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||||||| |||| |||||||||| | ||||||||||  |||||||||||||||| ||||||    
T  5122155 atgataaaaccttagtcttttgcatcttttacaaaatagaattactttttgtccacgttttta 5122217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 41260624 - 41260530
Alignment:
Q  232 atttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactc 326  Q
    ||||||||||||||||||| |||   || ||||||||| |||| |||||||||||||||| |  |||||||| ||||| |  | |||||||||||    
T  41260624 atttgtggtttttattttaccaaccgaatcaaaccaaaccaaactgcaacataagaaaaacactaattaaacttatgtcatctaaaccaatactc 41260530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 45226681 - 45226619
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||||||||||||  ||||||||| ||||||||||||  |||||||||||| ||| ||||||    
T  45226681 atgataaaatcttatccttttgcatttcttacaaaataaaattactttttgttcacgttttta 45226619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 513
Target Start/End: Complemental strand, 15724198 - 15724121
Alignment:
Q  437 ataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    ||||||||||| |||||||||| ||||| |||||| |||||| |||||||||  ||||| | ||||||||||| ||||    
T  15724198 ataaaatcttagtcttttgcatttcttaaaaaataggattacattttgtccatgtttttaacttggtctatgttgttg 15724121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 28148069 - 28148017
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccaca 490  Q
    |||||| ||| ||||||| || |||||||||||||||||||||||| ||||||    
T  28148069 taaaattttagtcttttgaatttcttacaaaatatgattactttttatccaca 28148017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 48653428 - 48653531
Alignment:
Q  188 atgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataaga 287  Q
    ||||||||| ||||||||| || ||| ||||||||||||  | | |||||| |||| |||||  ||||  |||||||||||| ||||  |||| ||||||    
T  48653428 atgtatttgaatcatttttttactcaactgcatggtttggttcggtttgtgattttgattttgtcaatcgaaccaaaccaaaccaaaccgcaatataaga 48653527  T
Q  288 aaaa 291  Q
    ||||    
T  48653528 aaaa 48653531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 25686074 - 25686124
Alignment:
Q  258 aaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatg 308  Q
    |||||||||||| ||| ||||||||||||||||| |  |||||||||||||    
T  25686074 aaccaaaccaaaccaagttgcaacataagaaaaacactaattaaacatatg 25686124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 4642728 - 4642683
Alignment:
Q  460 tcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    ||||| |||||| ||||||||||||||||| |||| ||||||||||    
T  4642728 tcttataaaataggattactttttgtccacgttttaatttggtcta 4642683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 35014565 - 35014520
Alignment:
Q  451 ttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||    
T  35014565 ttttgcatttcttacaaaataagattattttttgtccacgttttta 35014520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 513
Target Start/End: Complemental strand, 45983686 - 45983613
Alignment:
Q  441 aatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||||||| ||||| |||||| |||||  |||||||||  ||||| | ||||||||||| ||||    
T  45983686 aatcttaatcttttgcatttcttagaaaataggattatgttttgtccatgtttttaacttggtctatgttgttg 45983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 21562883 - 21562782
Alignment:
Q  414 gtactacttgaacttttaagatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacat-ttttatttggtctatgtagtt 512  Q
    |||||||||||||||  |  |||||||||||||| || ||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  21562883 gtactacttgaacttaaagaatgataaaatcttattcatttgcatttctaataaaatatgattactttttgtccacattttttatttggtctatgtagtt 21562784  T
Q  513 ga 514  Q
    ||    
T  21562783 ga 21562782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 42362991 - 42363071
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  42362991 atgataaaatcttagtattttgcatttcttacaaaatatgattactttttgtccacgtttttaacttggtctatgtcgttg 42363071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 27054387 - 27054300
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatatt 521  Q
    ||||| |||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||| |||||||    
T  27054387 atgattaaattttactcttttgtatttcttacaaaatatgattactttttgtccatattttaatttggtttatatagttgggaatatt 27054300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 44651271 - 44651191
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttga 514  Q
    |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||||| ||||||| ||||| ||||| |||||    
T  44651271 atgaaaaaatcttagtcttttgcatttcttacaaaataagattacgttttgtccatatttttacttggtatatgttgttga 44651191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 4280596 - 4280516
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttt-tatttggtctatgtagttg 513  Q
    |||||||||||||| ||| |||||| | |||||||||||||||| ||||||||||  ||||  ||||||||||||||||||    
T  4280596 atgataaaatcttagtctgttgcatttattacaaaatatgattattttttgtccatgttttaaatttggtctatgtagttg 4280516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 22472819 - 22472894
Alignment:
Q  417 ctacttgaactttta--agatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccaca 490  Q
    |||||||||||||||  | |||||||||||||| | |||||||| ||||||| ||||||||||||||||| |||||    
T  22472819 ctacttgaacttttagaaaatgataaaatcttagtattttgcatttcttacataatatgattactttttgcccaca 22472894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 5640501 - 5640555
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtcca 488  Q
    |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||    
T  5640501 atgataaaatcttagtcttttgcatttcttacaaaataggattacattttgtcca 5640555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 517
Target Start/End: Original strand, 25919032 - 25919110
Alignment:
Q  439 aaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    ||||| ||| ||||||| || | ||||||| | ||||||||||||||||||||||| |||||||||  |||||||||||    
T  25919032 aaaattttagtcttttgtatttattacaaagtttgattactttttgtccacattttaatttggtctgcgtagttgagaa 25919110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 50578772 - 50578826
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtcca 488  Q
    |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||    
T  50578772 atgataaaatcttagtcttttgcatttcttacaaaataggattacgttttgtcca 50578826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 55467431 - 55467495
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||| || |||||||||||||||||||||||||||| | |||  |||||||||| |||||||    
T  55467431 tcttttgtatttcttacaaaatatgattactttttgtccgcgtttaaatttggtctacgtagttg 55467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 20846783 - 20846708
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    |||||||||||||||||||||  || ||||||| ||||| |||||||| ||||||| ||||| ||||||| |||||    
T  20846783 atgataaaatcttaatcttttatatttcttacataatataattactttgtgtccacgtttttaatttggtttatgt 20846708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 37045605 - 37045540
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||| |||||||||||| ||||||||||||||| | ||||| ||||||| ||||| ||||    
T  37045605 tcttttgcatttcttacaaaataagattactttttgtccgcgtttttaatttggtttatgttgttg 37045540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 37656731 - 37656795
Alignment:
Q  420 cttgaactttta-agatgataaaatcttaatcttttgcatatcttacaaaatatgattacttttt 483  Q
    |||||||||||| ||||| |||||||| || ||||||||| ||||| | ||||||||||||||||    
T  37656731 cttgaacttttagagatgttaaaatctcaaccttttgcatttcttaaataatatgattacttttt 37656795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 10481125 - 10481224
Alignment:
Q  175 atatttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaa 274  Q
    ||||||| |||| |||||||||||||| |||  || ||| | | ||||||||| | |||||| ||||||||||||| |||   |||||||||||| ||||    
T  10481125 atatttggtttggatgtatttggatcactttattactcaaccgtatggtttgatttgatttgcggtttttattttatcaaccgaaccaaaccaaaccaaa 10481224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 512
Target Start/End: Complemental strand, 52632334 - 52632255
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagtt 512  Q
    |||||||||||||| | |||| ||| ||||||| || || |||| ||||||||||| ||||| ||||||| |||||||||    
T  52632334 atgataaaatcttagtattttacatttcttacataacattattaatttttgtccacgtttttaatttggtttatgtagtt 52632255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 5640294 - 5640368
Alignment:
Q  233 tttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatat 307  Q
    |||||| |||| |||||| |||   ||||| |||||| |||| ||||||||||||||||| | ||||||||||||    
T  5640294 tttgtgattttcattttaccaaccaaaccataccaaaccaaactgcaacataagaaaaatgttaattaaacatat 5640368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 17144510 - 17144587
Alignment:
Q  437 ataaaatcttaatcttttgcatatcttacaaaatatgattac-tttttgtccacattttt-atttggtctatgtagttg 513  Q
    ||||||||||| |||||||||| ||||| |||||| |||| | ||||||||||| ||||| ||||| ||||||||||||    
T  17144510 ataaaatcttagtcttttgcatttcttataaaata-gatttcatttttgtccacgtttttcatttgctctatgtagttg 17144587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 4555135 - 4555062
Alignment:
Q  231 gatttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaaca 304  Q
    |||||| |||||| |||||| || |  ||||||||| |||||||  |||||||||||||||| | |||||||||    
T  4555135 gatttgcggttttcattttaccagtcgaaccaaaccgaatcaaaccgcaacataagaaaaatgttaattaaaca 4555062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 517
Target Start/End: Complemental strand, 25507205 - 25507103
Alignment:
Q  417 ctacttgaacttttaa--gatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttga 514  Q
    |||||||||||||||   ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||| |||| || ||||| ||| |    
T  25507205 ctacttgaacttttagacgatgataaaatattaatcttttgcatttcttacaaaatatgattactttttatccactttttcatttagtttatgttgttta 25507106  T
Q  515 gaa 517  Q
    |||    
T  25507105 gaa 25507103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 10847301 - 10847376
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    |||||||||||||| |||||| ||| ||||||  ||||  |||||||||||||||||||||| |||||||||||||    
T  10847301 atgataaaatcttagtcttttacatttcttacgtaatagaattactttttgtccacatttttaatttggtctatgt 10847376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 508
Target Start/End: Complemental strand, 17652073 - 17651979
Alignment:
Q  417 ctacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||||||||| ||| | ||||||||||| |||||| ||| ||||||| | ||| |||||||||||||||||||||| ||||||| |||||    
T  17652073 ctacttgaacttttagagaataataaaatcttagtcttttacatttcttacatagtataattactttttgtccacatttttaatttggtttatgt 17651979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 18310244 - 18310170
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttt-tatttggtctatgtagttg 513  Q
    |||||||| ||||||  || |||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||    
T  18310244 aaatcttagtcttttatatttcttacaaaatatgattactttttgttcacgttttaaatttggtctatgtagttg 18310170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 41751453 - 41751392
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt 495  Q
    |||||||| |||||||||||||||| |||||| |||||  ||||||||||||||| ||||||    
T  41751453 atgataaagtcttaatcttttgcatttcttactaaataaaattactttttgtccatattttt 41751392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 44056247 - 44056154
Alignment:
Q  233 tttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactc 326  Q
    |||| |||||| |||||| |||   |||||||||||| |||| |||||||||||||||||||  ||||||||||||| || |  ||||||||||    
T  44056247 tttgcggttttcattttaccaactgaaccaaaccaaaccaaactgcaacataagaaaaatattgattaaacatatgtcacttagaccaatactc 44056154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 507
Target Start/End: Complemental strand, 8268948 - 8268880
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatg 507  Q
    |||||||| |||||||||| ||||| |||||   |||||||||||||||||||||| ||||||||||||    
T  8268948 aaatcttagtcttttgcatttcttaaaaaatggaattactttttgtccacatttttaatttggtctatg 8268880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 9330882 - 9330819
Alignment:
Q  263 aaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactc 326  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||| || |  ||||||||||    
T  9330882 aaccaaatcaaatcgcaacataagaaaaacattaattaaacatatgtcacctagaccaatactc 9330819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 517
Target Start/End: Complemental strand, 16063123 - 16063079
Alignment:
Q  473 gattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||    
T  16063123 gattactttttgtccacgttttaatttggtctacgtagttgagaa 16063079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 25559809 - 25559877
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    ||||||| || ||||||||| |  ||||||||||||||||| |||| |||||||||| | |||||||||    
T  25559809 tcttttgtatttcttacaaagttggattactttttgtccacgttttaatttggtctacgaagttgagaa 25559877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 26344838 - 26344902
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||| || |||||||||||| ||||||||||||||||| |||  ||||||| || |||||||    
T  26344838 tcttttgtatttcttacaaaataggattactttttgtccacgtttaaatttggtatacgtagttg 26344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 32910144 - 32910224
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||| ||||||||| |||||||||| |||||||||||| |||||  |||||||||  ||||| | ||||||||||| ||||    
T  32910144 atgagaaaatcttagtcttttgcatttcttacaaaataggattatgttttgtccatgtttttaacttggtctatgttgttg 32910224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 39157878 - 39157950
Alignment:
Q  233 tttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacat 305  Q
    |||||||||||||||||| |||   |||||||||||||||||  ||||||||||| ||| |  ||||||||||    
T  39157878 tttgtggtttttattttatcaaccgaaccaaaccaaatcaaaccgcaacataagataaacactaattaaacat 39157950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 17989372 - 17989273
Alignment:
Q  417 ctacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    ||||||||||||||| ||| |||||| |||||||||||||  || ||||||| ||||  |||||||| ||||||| ||||| ||||||| ||||| ||||    
T  17989372 ctacttgaacttttatagaatgataacatcttaatcttttatatttcttacataatagaattactttgtgtccacgtttttaatttggtttatgttgttg 17989273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 50951827 - 50951874
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||| ||| ||||||| |||| ||||||||||||||||||||||||    
T  50951827 tcttttacatttcttacataataagattactttttgtccacattttta 50951874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 513
Target Start/End: Complemental strand, 382360 - 382282
Alignment:
Q  436 gataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||| ||| || ||| ||| |||||||  ||||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  382360 gataaaattttagtcatttacatttcttacagtatatgattactttttgtccgcatttttaattcggtctatgttgttg 382282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 11073144 - 11073198
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtcca 488  Q
    ||||||| |||||| |||||||||| |||||||||||| |||| | |||||||||    
T  11073144 atgataacatcttagtcttttgcatttcttacaaaataggatttcgttttgtcca 11073198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 11537126 - 11537024
Alignment:
Q  417 ctacttgaacttttaa-----gatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtag 510  Q
    ||||||||||||||||     ||| ||||||||||||  |||||||| |||||| ||||| |||||| ||||||  |||||||| |||||||||  ||||    
T  11537126 ctacttgaacttttaaaaaatgataataaaatcttaactttttgcatttcttacgaaataggattacattttgttaacatttttaatttggtctgcgtag 11537027  T
Q  511 ttg 513  Q
    |||    
T  11537026 ttg 11537024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 23474895 - 23474957
Alignment:
Q  451 ttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagtt 512  Q
    |||| ||| |||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||    
T  23474895 tttttcatttcttacaaaataggattagtttttgtccacgtttttaatttggtctatatagtt 23474957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 508
Target Start/End: Original strand, 35992352 - 35992446
Alignment:
Q  417 ctacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||||||||| ||| | ||||||||||| |||||| ||| ||||||| ||||  ||||| |||||||||| ||||| ||||||| |||||    
T  35992352 ctacttgaacttttagagaataataaaatcttagtcttttacatttcttacataatagaattacgttttgtccacgtttttaatttggtttatgt 35992446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 44056061 - 44055980
Alignment:
Q  417 ctacttgaactttta--agatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||||||  | |||||||||| | | |||||||||| | ||| |||||| ||||||||||| ||||| ||||||    
T  44056061 ctacttgaacttttagaaaatgataaaatttaagtcttttgcatttattagaaaataagattactttttttccacgttttta 44055980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 52829117 - 52829055
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||||| | |||| ||| ||||||| ||||| ||||||||| ||||| |||||||    
T  52829117 atgataaaatcttagtattttacatttcttacataatataattacttttcgtccatattttta 52829055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 9961940 - 9962021
Alignment:
Q  417 ctacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||||||||||||| ||| ||||||||||||||| ||||  || ||||||| ||||  |||||||| ||||||| ||||||    
T  9961940 ctacttgaacttttagagaatgataaaatcttaatattttatatttcttacataataaaattactttgtgtccacgttttta 9962021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 27350921 - 27350860
Alignment:
Q  460 tcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatatt 521  Q
    |||||||||||| | ||||||||||||||  |||| ||||| |||| |||||||| ||||||    
T  27350921 tcttacaaaatagggttactttttgtccaagttttaatttgctctacgtagttgaaaatatt 27350860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 8165317 - 8165396
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||| |||||| ||| ||||| ||||||||| |||||||| ||||  ||||| | ||||||||||| ||||    
T  8165317 atgataaaatcttagtctttt-catttcttaaaaaatatgaatactttttttccaggtttttaacttggtctatgttgttg 8165396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 52380524 - 52380580
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    ||||||| || ||||||||| |||||||||||||||| | | |||| ||||||||||    
T  52380524 tcttttgtatttcttacaaactatgattactttttgtgcgcgttttaatttggtcta 52380580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 13325604 - 13325525
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||||    
T  13325604 taaaattttagtcttttgcatttcttacaaaatatgattactttttgttcacgttttaatttggtctacttagttgagaa 13325525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 499
Target Start/End: Complemental strand, 41346218 - 41346154
Alignment:
Q  435 tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttattt 499  Q
    ||||||||||| ||||||||| || |||| ||||||| |||||||||||||||||||| ||||||    
T  41346218 tgataaaatctcaatcttttgtatttctttcaaaataagattactttttgtccacattattattt 41346154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 40436746 - 40436665
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttga 514  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||| |||||||||  ||||| | ||||||||||| |||||    
T  40436746 atgataaaatcttagtctttttcatttcttataaaatatgattacattttgtccatgtttttaacttggtctatgttgttga 40436665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 517
Target Start/End: Complemental strand, 1271435 - 1271367
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    ||||||| || |||||||||||||||||||||||||||| | |||  |||||||||| | |||||||||    
T  1271435 tcttttgtatttcttacaaaatatgattactttttgtccgcgtttaaatttggtctacgcagttgagaa 1271367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 11219259 - 11219180
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    |||||| ||| |||| || || |||||||||||| |||||||||||||| || |||| |||||||||  |||||||||||    
T  11219259 taaaattttagtcttgtgtatttcttacaaaataggattactttttgtctacgttttaatttggtctgcgtagttgagaa 11219180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 22810970 - 22811044
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    |||||| ||||||||||| || ||||||||||||  || ||||||||||||| |||| |||||||||| |||||||    
T  22810970 taaaattttaatcttttgtatttcttacaaaataaaat-actttttgtccacgttttaatttggtctacgtagttg 22811044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 9012609 - 9012671
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||||||||||||   |||||||| |||||||||||| |||||||||||||| || ||||||    
T  9012609 atgataaaatcttagctttttgcatttcttacaaaataagattactttttgtcaacgttttta 9012671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 527
Target Start/End: Original strand, 12193252 - 12193330
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatattcttcga 527  Q
    ||||||| || |||||||||||||||||||||||| | ||| |||| |||||||||| || ||| |||| ||| |||||    
T  12193252 tcttttgtatttcttacaaaatatgattactttttatgcacgttttaatttggtctacgttgtttagaacattgttcga 12193330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 527
Target Start/End: Original strand, 12437680 - 12437758
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatattcttcga 527  Q
    ||||||| || |||||||||||||||||||||||| | ||| |||| |||||||||| || ||| |||| ||| |||||    
T  12437680 tcttttgtatttcttacaaaatatgattactttttatgcacgttttaatttggtctacgttgtttagaacattgttcga 12437758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 28441778 - 28441716
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||| ||| |||||||||| ||||| |||||| ||||||||||| ||||| ||||||    
T  28441778 atgataaaattttagtcttttgcatttcttaaaaaatacgattactttttttccacgttttta 28441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 521
Target Start/End: Complemental strand, 4785533 - 4785461
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatatt 521  Q
    ||||||| || ||||||||| |  ||||||||||||||||| |||| |||| ||||| ||||||| |||||||    
T  4785533 tcttttgtatttcttacaaagttggattactttttgtccacgttttaatttagtctacgtagttgggaatatt 4785461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 505
Target Start/End: Original strand, 38926207 - 38926279
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtcca-catttttatttggtcta 505  Q
    ||||||||||||||||||||| ||| |||| || |||| ||||| ||||||||||   |||||||||||||||    
T  38926207 atgataaaatcttaatcttttacatttcttgcacaataagattattttttgtccatgttttttatttggtcta 38926279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 24681867 - 24681934
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    |||||| ||| ||||||  || |||||||||||| || |||||||||||||| |||| ||||||||||    
T  24681867 taaaattttagtcttttatatttcttacaaaataggagtactttttgtccacgttttaatttggtcta 24681934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 31477928 - 31477975
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgt 485  Q
    ||||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  31477928 taaaatcttaatcttttgcatttcttagaaaatacgattacgttttgt 31477975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 508
Target Start/End: Original strand, 14185685 - 14185721
Alignment:
Q  473 gattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14185685 gattactttttgtccacatttttaatttggtctatgt 14185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 500
Target Start/End: Original strand, 30253553 - 30253589
Alignment:
Q  464 acaaaatatgattactttttgtccacatttttatttg 500  Q
    |||||||| |||||||||||||||||||||| |||||    
T  30253553 acaaaataggattactttttgtccacattttaatttg 30253589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 437 - 514
Target Start/End: Original strand, 22701114 - 22701191
Alignment:
Q  437 ataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttt-tatttggtctatgtagttga 514  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  22701114 ataaaatcttattcttttgcatttctta-aaaatatgattactttttgtgcacgttttttatttggtctatgtagttga 22701191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 30855404 - 30855324
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||||| |||||||| ||| |||||||||||||| ||||||||  ||||||| ||||||||||||| ||||    
T  30855404 atgataaaatcttaatgttttgcatttctcacaaaatatgattattttttgtctgcatttttaatttggtctatgttgttg 30855324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 513
Target Start/End: Original strand, 10338586 - 10338661
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    |||||| ||| ||||||| || |||||||||||||||||||||||||||||| |||| |||| ||||| |||||||    
T  10338586 taaaattttagtcttttgtatctcttacaaaatatgattactttttgtccacgttttaattttgtctaagtagttg 10338661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 11834243 - 11834310
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  11834243 taaaattttagtcttttgtatttcttacaaaatatgattactttttgtccagattttaatttggtcta 11834310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 2734645 - 2734571
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgt 508  Q
    |||||||||||||| |||||| ||| ||||||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  2734645 atgataaaatcttagtcttttacatttcttacataataagattactttttatccatattttaatttggtctatgt 2734571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 512
Target Start/End: Complemental strand, 23729676 - 23729602
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagtt 512  Q
    |||||||||| ||||||| || |||||||||||||||||||||||||| ||| |||  |||||||| ||||||||    
T  23729676 taaaatcttagtcttttgtatttcttacaaaatatgattactttttgttcacgtttaaatttggtccatgtagtt 23729602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 508
Target Start/End: Original strand, 26524716 - 26524785
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccaca-tttttatttggtctatgt 508  Q
    ||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| |||| |||||||||||||    
T  26524716 aaatcttaatcttttacatttcttacataatataattactttttgtccacagttttaatttggtctatgt 26524785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 48643096 - 48643016
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||| ||||||| || ||||||||||||||||||| |||||||||  ||||| | ||||||||||| ||||    
T  48643096 atgataaaatcttagtcttttgtatttcttacaaaatatgattacgttttgtccatgtttttaacttggtctatgttgttg 48643016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 49012358 - 49012278
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||  |||||||||| ||||||||||||  |||||||||||||||| ||||| |||| ||| |||||||||    
T  49012358 atgataaaatcttgttcttttgcatttcttacaaaatagaattactttttgtccacgtttttaatttagtccatgtagttg 49012278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 32237975 - 32237900
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||| ||||||||||||||  | ||||| ||||||||||| |||||||||| ||||| |||||||||||||    
T  32237975 atgataaaagcttaatcttttgcaatttttacataatatgattacattttgtccacgtttttaatttggtctatgt 32237900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 8118057 - 8118103
Alignment:
Q  437 ataaaatcttaatcttttgcatatcttacaaaatatgattacttttt 483  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  8118057 ataaaatcttaatcttttgtatttcttacaaaatatgattacttttt 8118103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 23675686 - 23675624
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||||||||||||||||||| ||| | ||||| |||| ||||||||||||||||| ||||||    
T  23675686 atgataaaatcttaatcttttacatttattacataataggattactttttgtccacgttttta 23675624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 22298840 - 22298761
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||| |||| ||| ||||||| || |||||  ||||| ||||||||||||| ||| |||| ||||||||||||||||||    
T  22298840 atgattaaattttagtcttttgtatttcttatcaaataggattactttttgttcacgttttaatttggtctatgtagttg 22298761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 33434420 - 33434339
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttga 514  Q
    ||||||||||| || |||||||||| | ||||||||||  |||| ||||||| ||  ||||| |||||||||||||||||||    
T  33434420 atgataaaatcatactcttttgcatttgttacaaaatagaattattttttgtgcatgtttttaatttggtctatgtagttga 33434339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 21237553 - 21237621
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta-tttggtctatg 507  Q
    |||||||| |||||| ||| ||||||| || || ||||||||||||||||| ||||| |||||||||||    
T  21237553 aaatcttagtcttttacatttcttacataacataattactttttgtccacaattttattttggtctatg 21237621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 508
Target Start/End: Complemental strand, 46147516 - 46147444
Alignment:
Q  437 ataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccac-atttttatttggtctatgt 508  Q
    ||||||||||| |||||| ||| ||||||| ||||  ||||||||||||||||  |||||||||||| |||||    
T  46147516 ataaaatcttagtcttttacatttcttacataatagaattactttttgtccacgttttttatttggtttatgt 46147444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 40849428 - 40849317
Alignment:
Q  177 atttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaatt 276  Q
    |||||||||| ||||||| |||||| |||| || ||| | ||||||||||  | | |||| |||||| |||||| |||   |||||||||||| ||||      
T  40849428 atttgatttggatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 40849329  T
Q  277 gcaacataagaa 288  Q
    ||||||||||||    
T  40849328 gcaacataagaa 40849317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 6879666 - 6879740
Alignment:
Q  233 tttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatat 307  Q
    |||||| ||||||||||| ||||  ||| |||||||| |||| | |||| |||||||||||  ||||||||||||    
T  6879666 tttgtgatttttattttaccaatcgaactaaaccaaaccaaactacaacttaagaaaaatactaattaaacatat 6879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 7697865 - 7697752
Alignment:
Q  178 tttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaattg 277  Q
    ||||||| | || |||| ||||||||||| || ||| |||||||||||||   |||||| |||||| |||||| |||   |||||||||||| ||||       
T  7697865 tttgattcggatttattcggatcatttttttactcaactgcatggtttgatctgatttgcggttttgattttaccaaccgaaccaaaccaaaccaaacca 7697766  T
Q  278 caacataagaaaaa 291  Q
    ||| ||||||||||    
T  7697765 caatataagaaaaa 7697752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 36550973 - 36550920
Alignment:
Q  238 ggtttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaa 291  Q
    ||||||||||||| ||||  ||||||| ||||| |||||| |||||||||||||    
T  36550973 ggtttttattttatcaatcaaaccaaaacaaattaaattgtaacataagaaaaa 36550920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 38903314 - 38903265
Alignment:
Q  258 aaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatat 307  Q
    |||||||||||||||||  ||||||||||||||| |  ||||||||||||    
T  38903314 aaccaaaccaaatcaaaccgcaacataagaaaaacaataattaaacatat 38903265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 513
Target Start/End: Complemental strand, 7697585 - 7697517
Alignment:
Q  445 ttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||||||  || ||||||||| |  ||||||||||| ||||| |||| |||||||||| |||||||    
T  7697585 ttaatctttttaatttcttacaaagttggattactttttttccacgttttaatttggtctacgtagttg 7697517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 20334876 - 20334820
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    ||||||| || |||||||||||| ||||||||||||| ||| |||| |||| |||||    
T  20334876 tcttttgtatttcttacaaaataggattactttttgtgcacgttttaatttagtcta 20334820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 23033008 - 23032928
Alignment:
Q  417 ctacttgaacttttaaga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||||  ||| ||||||||||||||||||||  || ||||||| ||||  ||||||||  || ||||||||||    
T  23033008 ctacttgaactttagagaatgataaaatcttaatcttttatatttcttacataatagaattactttgcgttcacattttta 23032928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 34881094 - 34881156
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||||||    
T  34881094 atgataaaatcttagttttttgcatttcttacaaaatacgattactttttgtccacattttta 34881156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 513
Target Start/End: Original strand, 7487068 - 7487170
Alignment:
Q  414 gtactacttgaactttta--agatgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtag 510  Q
    ||||||||||||||||||  | ||||||||||||||||||| | ||| ||||| | |||||||||| |||||||| || ||||| ||||||||||||| |    
T  7487068 gtactacttgaacttttagaaaatgataaaatcttaatcttatacatttcttagagaatatgattaatttttgtctacgtttttaatttggtctatgttg 7487167  T
Q  511 ttg 513  Q
    |||    
T  7487168 ttg 7487170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 33792953 - 33792874
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    |||||| ||||||||||  || ||||||||||||||||| |||||||||||| |||| |||| ||||| |||||||||||    
T  33792953 taaaattttaatcttttttatttcttacaaaatatgattgctttttgtccacgttttaatttagtctacgtagttgagaa 33792874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 512
Target Start/End: Complemental strand, 25495394 - 25495320
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagtt 512  Q
    |||||| ||| ||||||| || |||||||||||| ||||||||||||||||| |||| |||||||||| ||||||    
T  25495394 taaaattttagtcttttgtatttcttacaaaataagattactttttgtccacgttttaatttggtctacgtagtt 25495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 40331237 - 40331326
Alignment:
Q  417 ctacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccaca-tttttatttggtc 503  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||||| |||||| |||||||||||||    
T  40331237 ctacttgaacttttagagaatgataaaatcttagtcttttgcatttcttaaaaaataagattattttttatccacattttttatttggtc 40331326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 10090523 - 10090459
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||| || |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||    
T  10090523 tcttttgtatttcttacaaaataggattactttttgtccaaattttaatttggtctacgtagttg 10090459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 34111545 - 34111620
Alignment:
Q  436 gataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt---atttggtctatgt 508  Q
    |||||||||||  |||||| ||| ||||||| |||||||||||||||||||||| |||||   |||||||||||||    
T  34111545 gataaaatctttgtcttttacatttcttacataatatgattactttttgtccacgtttttttaatttggtctatgt 34111620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 2589287 - 2589211
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattac-tttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||||||||||||||| ||| ||||||| ||||  ||||| ||||||||||||||||| ||||||| |||||    
T  2589287 atgataaaatcttaatcttttacatttcttacataatagaattacttttttgtccacatttttaatttggtatatgt 2589211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 22747109 - 22747181
Alignment:
Q  176 tatttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattt 248  Q
    ||||||||||||||||||| |||||| |||| |||||| | ||||||||||| | | |||| |||||||||||    
T  22747109 tatttgatttgaatgtattcggatcaattttttattcaaccgcatggtttgattcggtttgcggtttttattt 22747181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 12378856 - 12378931
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    |||||||||||||| | |||| ||| ||||||||||||  |||| ||||||||||||||||| ||||||| |||||    
T  12378856 atgataaaatcttagtattttacatttcttacaaaatagaattaatttttgtccacatttttaatttggtttatgt 12378931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 14652767 - 14652692
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    |||||||||||||||||||||| || |||||||||||| |||||| | |||||||  ||||| | |||||||||||    
T  14652767 atgataaaatcttaatcttttgaatttcttacaaaataggattacatattgtccatgtttttaagttggtctatgt 14652692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 485
Target Start/End: Complemental strand, 40692761 - 40692714
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgt 485  Q
    |||||||||| ||||||| || ||||||||||||||||||||||||||    
T  40692761 taaaatcttagtcttttgtatttcttacaaaatatgattactttttgt 40692714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 691123 - 691253
Alignment:
Q  177 atttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaatt 276  Q
    |||||||| | ||||| ||||||||||||  |  ||| | ||||||||||  | |||||| |||||| |||||| |||   |||||||||||| ||||      
T  691123 atttgattcggatgtaattggatcattttcttgctcaaccgcatggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 691222  T
Q  277 gcaacataagaaaaatatgaattaaacatat 307  Q
    |||||| ||||||||| | ||||||||||||    
T  691223 gcaacaaaagaaaaatgttaattaaacatat 691253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 508
Target Start/End: Complemental strand, 18845820 - 18845751
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    |||||||| |||||| ||| ||||||||||||  |||||||| ||||||||||||| ||||| |||||||    
T  18845820 aaatcttagtcttttacatttcttacaaaatagaattactttatgtccacatttttaatttgatctatgt 18845751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 526
Target Start/End: Complemental strand, 34087703 - 34087626
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaatattcttcg 526  Q
    ||||||| || |||| ||||||||||||||||||||| ||  |||| |||||||||| |||||| |||| ||| ||||    
T  34087703 tcttttgtatttctttcaaaatatgattactttttgtgcatgttttaatttggtctacgtagttcagaacattgttcg 34087626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 40109393 - 40109438
Alignment:
Q  434 atgataaaatcttaa-tcttttgcatatcttacaaaatatgattac 478  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  40109393 atgataaaatcttaaatcttttgcatctcttacaaaatatgattac 40109438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 11402906 - 11402826
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgtagttg 513  Q
    |||||||||||||| |||||| | | ||||||||||||||||||  |||||||||  ||||| | ||||||||||| ||||    
T  11402906 atgataaaatcttagtcttttacttttcttacaaaatatgattatgttttgtccatgtttttaacttggtctatgttgttg 11402826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 18432659 - 18432535
Alignment:
Q  177 atttgatttgaatgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaatt 276  Q
    |||||||||| ||||||||| || |||||| |||||| | |||| |||||  | | |||| ||||||||||||| |||   ||||||| |||| ||||      
T  18432659 atttgatttggatgtatttgaattatttttgtattcaaccgcatagtttggtttggtttgcggtttttattttatcaaccgaaccaaatcaaaccaaacc 18432560  T
Q  277 gcaacataagaaaaatatgaattaa 301  Q
    ||||||||| ||||| || ||||||    
T  18432559 gcaacataaaaaaaacattaattaa 18432535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 34880914 - 34880982
Alignment:
Q  258 aaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactc 326  Q
    |||||||||||||||||  ||||||||||||||| || ||||||| |||||  || | |||||||||||    
T  34880914 aaccaaaccaaatcaaaccgcaacataagaaaaacattaattaaatatatgccacttaaaccaatactc 34880982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 512
Target Start/End: Original strand, 28224639 - 28224713
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagtt 512  Q
    |||||| ||| ||||||| || ||||||||||||    |||| |||||||||||||| |||||||||| ||||||    
T  28224639 taaaattttagtcttttgtatttcttacaaaataaatctactatttgtccacattttaatttggtctacgtagtt 28224713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 36568046 - 36567944
Alignment:
Q  414 gtactacttgaactttta-aga-tgataaaatcttaa-tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtag 510  Q
    |||||||||||||| ||| ||| ||||||||| || | ||||||| || ||||||||||||||||||||||| |||  | |||  |||||||||| ||||    
T  36568046 gtactacttgaactcttagagaatgataaaatatttagtcttttgtatttcttacaaaatatgattacttttggtctgcgtttaaatttggtctacgtag 36567947  T
Q  511 ttg 513  Q
    |||    
T  36567946 ttg 36567944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 518
Target Start/End: Complemental strand, 4414526 - 4414445
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttt-tatttggtctatgtagttgagaat 518  Q
    |||||||||| ||||||| || | |||||||||||||||||  ||||| ||| ||||  ||||| || ||||||||||||||    
T  4414526 taaaatcttagtcttttgtattttttacaaaatatgattaccatttgttcacgttttaaatttgttccatgtagttgagaat 4414445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 6595421 - 6595372
Alignment:
Q  258 aaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatat 307  Q
    |||||||||||| ||||  |||||||||||||||| | ||||||||||||    
T  6595421 aaccaaaccaaaccaaaccgcaacataagaaaaatgttaattaaacatat 6595372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 40331009 - 40331129
Alignment:
Q  188 atgtatttggatcatttttatattcatctgcatggtttgagtggatttgtggtttttattttagcaatataaccaaaccaaatcaaattgcaacataaga 287  Q
    ||||||||||||||||||| || ||| ||| || |||| | | | |||||||||||||||||| ||| | || ||||| ||| ||||  || |||||| |    
T  40331009 atgtatttggatcatttttttactcaactgtatagtttaattcggtttgtggtttttattttaccaacagaatcaaactaaaccaaaccgctacataa-a 40331107  T
Q  288 aaaatatgaattaaacatatgt 309  Q
    |||| |  ||||||||||||||    
T  40331108 aaaacactaattaaacatatgt 40331129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 41455155 - 41455110
Alignment:
Q  460 tcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||    
T  41455155 tcttacaaaatatgattactttttgtccgcgtttaaatttggtcta 41455110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 4414706 - 4414658
Alignment:
Q  261 caaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgt 309  Q
    ||||||||| |||| | |||||||||||||| || ||||||||||||||    
T  4414706 caaaccaaaccaaactacaacataagaaaaacattaattaaacatatgt 4414658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 513
Target Start/End: Complemental strand, 6400126 - 6400051
Alignment:
Q  438 taaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    |||||| ||| ||||||| || |||||||||||| ||||||||||||||||| |||| |||||||||| |||||||    
T  6400126 taaaattttagtcttttgtatttcttacaaaataagattactttttgtccacgttttaatttggtctacgtagttg 6400051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 13532049 - 13532103
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtcca 488  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||  ||||||||    
T  13532049 atgataaaatcttaatcttttgcatttcttacaaaataggattacgatttgtcca 13532103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 517
Target Start/End: Original strand, 31945218 - 31945295
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    |||| ||| ||||||| || ||||||||| | |||||| ||||||||||| |||| |||||||||| |||||||||||    
T  31945218 aaattttagtcttttgtatttcttacaaagtttgattaatttttgtccacgttttaatttggtctacgtagttgagaa 31945295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 20500869 - 20500794
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||||||||||||||||||||||| ||||||||||||   |||| |||||||||  ||||| | |||||||||||    
T  20500869 atgataaaatcttaatcttttgcatttcttacaaaataaacttacgttttgtccatgtttttaacttggtctatgt 20500794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 22414095 - 22414032
Alignment:
Q  450 cttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    |||||| || |||||||||||  ||||||||||||||||| |||| || |||||||||||||||    
T  22414095 cttttgtatttcttacaaaatgagattactttttgtccacgttttaatctggtctatgtagttg 22414032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 7169872 - 7169928
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtcta 505  Q
    ||||||| || |||||||||||||||||| ||||||||||| |||| |||| |||||    
T  7169872 tcttttgtatttcttacaaaatatgattattttttgtccacgttttaatttagtcta 7169928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 17306670 - 17306595
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt-atttggtctatgt 508  Q
    ||||| |||||||| |||||| ||| ||||||| ||||  ||||||||||||||| |||||| |||||| ||||||    
T  17306670 atgatgaaatcttagtcttttacatttcttacataatagaattactttttgtccatatttttaatttggcctatgt 17306595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 4563163 - 4563109
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttt 494  Q
    ||||||||||||||| ||| | ||| | |||| ||||||||||||||||||||||    
T  4563163 aaatcttaatcttttacatttattaaataataggattactttttgtccacatttt 4563109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 8064799 - 8064737
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    ||||| |||||||| || ||| ||| ||||||| ||||  |||||||||||||||||||||||    
T  8064799 atgatgaaatcttagtcgtttacatttcttacataatagaattactttttgtccacattttta 8064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 483
Target Start/End: Complemental strand, 13092289 - 13092255
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattacttttt 483  Q
    ||||||||||||||||||||||| |||||||||||    
T  13092289 tcttttgcatatcttacaaaataggattacttttt 13092255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 13531866 - 13531915
Alignment:
Q  258 aaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatat 307  Q
    |||||||||||| ||||  |||||||||||||||| | ||||||||||||    
T  13531866 aaccaaaccaaaccaaaccgcaacataagaaaaatgttaattaaacatat 13531915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 14940349 - 14940409
Alignment:
Q  436 gataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||| | |||| ||| ||||||| ||||| |||||||||||| ||| ||||||    
T  14940349 gataaaatcttagtgttttacatttcttacataatataattactttttgttcacgttttta 14940409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 11377434 - 11377510
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta-tttggtctatgta 509  Q
    |||||||||||||| ||||||| || ||||||| |||| ||||| |||||||||||| ||||| ||| |||||||||    
T  11377434 atgataaaatcttagtcttttgtatttcttacagaataggattattttttgtccacaattttagtttagtctatgta 11377510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 30514697 - 30514777
Alignment:
Q  418 tacttgaactttta-aga-tgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||||||||||||| ||| ||||||||||||||||||||| || |||| || ||||| |||| ||||||||||| ||||||    
T  30514697 tacttgaacttttagagaatgataaaatcttaatcttttgtatttcttgcagaatattattagtttttgtccacgttttta 30514777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 15320345 - 15320414
Alignment:
Q  417 ctacttgaacttttaag---atgataaaatcttaatcttttgcatatcttacaaaatatgattacttttt 483  Q
    |||||||||||||| ||   ||| |||||||||| ||||||| || ||||||||||||||||||||||||    
T  15320345 ctacttgaactttttagtgaatgttaaaatcttagtcttttgtatttcttacaaaatatgattacttttt 15320414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 501
Target Start/End: Original strand, 21734276 - 21734343
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacatttttatttgg 501  Q
    |||||||||| ||| |||||| ||| ||||||| ||||||||||| ||||||||| ||||||| ||||    
T  21734276 atgataaaatattattcttttacatttcttacagaatatgattaccttttgtccatatttttaattgg 21734343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 1331321 - 1331241
Alignment:
Q  417 ctacttgaacttttaag--atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttt 495  Q
    ||||||||||||||||   || ||||||||||| |||||| ||| ||||||| ||||  |||||||||||||||| |||||    
T  1331321 ctacttgaacttttaaagaataataaaatcttagtcttttacatttcttacataatagaattactttttgtccacgttttt 1331241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 10242514 - 10242563
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattacttttt 483  Q
    ||||||||||| |||| |||||||| |||||||||| |||||||||||||    
T  10242514 atgataaaatcataatattttgcatctcttacaaaacatgattacttttt 10242563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 11678290 - 11678226
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||| || |||||||||||||||||||||||||||| | |||  ||||| |||| |||||||    
T  11678290 tcttttgtatttcttacaaaatatgattactttttgtccgcgtttaaatttgctctacgtagttg 11678226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 11695768 - 11695704
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttg 513  Q
    ||||||| || |||||||||||||||||||||||||||| | |||  ||||| |||| |||||||    
T  11695768 tcttttgtatttcttacaaaatatgattactttttgtccgcgtttaaatttgctctacgtagttg 11695704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 5862458 - 5862526
Alignment:
Q  449 tcttttgcatatcttacaaaatatgattactttttgtccacatttttatttggtctatgtagttgagaa 517  Q
    ||||||| || |||||||||||  ||||||||||| ||||  |||| ||||||||||  ||||||||||    
T  5862458 tcttttgtatttcttacaaaattggattactttttatccatgttttaatttggtctacttagttgagaa 5862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 17763050 - 17762994
Alignment:
Q  440 aaatcttaatcttttgcatatcttacaaaatatgattactttttgtccacattttta 496  Q
    |||| ||| |||||| ||| ||||| | |||| ||||||||||||||||||||||||    
T  17763050 aaatgttagtcttttacatttcttatataataggattactttttgtccacattttta 17762994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 44085796 - 44085744
Alignment:
Q  434 atgataaaatcttaatcttttgcatatcttacaaaatatgattactttttgtc 486  Q
    |||||||||||| | ||||||| || |||||||||||| |||||| |||||||    
T  44085796 atgataaaatctcagtcttttgtatttcttacaaaataggattacgttttgtc 44085744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 428152 - 428066
Alignment:
Q  240 tttttattttagcaatataaccaaaccaaatcaaattgcaacataagaaaaatatgaattaaacatatgtgacgtgaaccaatactc 326  Q
    ||||||||||| |||   ||| ||||||||||||||  |||||| |||||||||  |||||||||||||| || | |||||||||||    
T  428152 tttttattttaccaaccgaactaaaccaaatcaaatctcaacatcagaaaaataataattaaacatatgtcacataaaccaatactc 428066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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