View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19463_low_8 (Length: 511)
Name: NF19463_low_8
Description: NF19463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19463_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Complemental strand, 29097515 - 29097022
Alignment:
| Q |
10 |
acatcatcaagcaaattattaggtctggttgtaaagtatatgttattattaatgtcacgagttgttatctgcacatagcaatttacatctgtaacattct |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
29097515 |
acatcattaagcaaattattaggtctggttgtaaagtatatgttattattaatgtcacgtgttattatctgtacatagcaatttacaactgtaacattct |
29097416 |
T |
|
| Q |
110 |
cctacaatatttataggttgtaacttgta---------actgc---cacaatattctgaactgcgggataaatggtgcatttggatcaacttataaacaa |
197 |
Q |
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| T |
29097415 |
cctacaatatttataggttgtaacttgtagagtatttcaatgatctctttatattctggactgcgggataaatggtgcatttggatcaacttataaacaa |
29097316 |
T |
|
| Q |
198 |
tttatttgggcttagctaccgacatatgcacttgtatgagtgtatgaaaaaacttatgaaaataacgtatgacatatctataagctggttgtagagtatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29097315 |
tttatttgggcttagctaccgacatatgcacttgtatgagtgtatgaaaaaacttatgaaaataacgtatgacatatctataagctggttgtagagtatt |
29097216 |
T |
|
| Q |
298 |
acaatgatctctttaggataactgatggaacagtttaaccaca-nnnnnnnctttgttcatagaaatagcttatacataagttcataattaagttgttta |
396 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29097215 |
tcaatgatctcattaggataaccgatggaacagtttaaccacattttttttctttgttcatagaaatagcttatacataagttcataattaagttgttta |
29097116 |
T |
|
| Q |
397 |
tccaaacacccccaaaatccataaaatctttgatgtcatatatctctagaagattggttttctgtctatttaataagaaaaggcctcaaagctcg |
491 |
Q |
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| T |
29097115 |
tccaaaca-ccccaaaatctataaaatctctgatgtcatatatctctagaagattggctttctgtctatttaataagaaaaggcctcaaagctcg |
29097022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 12225011 - 12225058
Alignment:
| Q |
357 |
tagaaatagcttatacataagttcataattaagttgtttatccaaaca |
404 |
Q |
| |
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|||||||| |||||||||||| || ||||||||||||||||||||||| |
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|
| T |
12225011 |
tagaaataacttatacataagctcttaattaagttgtttatccaaaca |
12225058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 36778069 - 36778108
Alignment:
| Q |
360 |
aaatagcttatacataagttcataattaagttgtttatcc |
399 |
Q |
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||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
36778069 |
aaatagcttatacataagtgcttaattaagttgtttatcc |
36778108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 27237973 - 27238018
Alignment:
| Q |
359 |
gaaatagcttatacataagttcataattaagttgtttatccaaaca |
404 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
27237973 |
gaaatagcttatacataagcacttagttaagttgtttatccaaaca |
27238018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 27378938 - 27378986
Alignment:
| Q |
356 |
atagaaatagcttatacataagttcataattaagttgtttatccaaaca |
404 |
Q |
| |
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|||||||||||||||||||||| | ||||| |||||||| |||||||| |
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| T |
27378938 |
atagaaatagcttatacataagcacttaatttagttgtttgtccaaaca |
27378986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 13508491 - 13508443
Alignment:
| Q |
356 |
atagaaatagcttatacataagttcataattaagttgtttatccaaaca |
404 |
Q |
| |
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|||||||||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
13508491 |
atagaaatagcttaaacataaacacttaattaagttgtttatccaaaca |
13508443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 21782680 - 21782728
Alignment:
| Q |
356 |
atagaaatagcttatacataagttcataattaagttgtttatccaaaca |
404 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||| |
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| T |
21782680 |
atagaaatagcttaaacataaacacttaattaagttgtttatccaaaca |
21782728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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