View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19464_low_1 (Length: 438)
Name: NF19464_low_1
Description: NF19464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19464_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 25347050 - 25347311
Alignment:
| Q |
6 |
gaaaatttgtttcatatggtcagaatttcatccattaagatgaataagtggataatattggtttcaacctcaaccgatatatattgcagtgtccctacaa |
105 |
Q |
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| T |
25347050 |
gaaaaattgtctaatatggtcagaatttcatccattaagatgaataagtggataatattggtttcaacctcaaccgatgtatattgcagtgtccctacaa |
25347149 |
T |
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| Q |
106 |
actgagctatgagctatgcttatgataaaggggagatcttttctctaatttaaaccctaaactatgtaaaaatagtaattaatcactaaagtatataaaa |
205 |
Q |
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| T |
25347150 |
accgagctatgagctattcttatgataaaggggagatcttttctctaatttaaaccctaaactacgtaaaaataataattaatcactaaagtatataaaa |
25347249 |
T |
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| Q |
206 |
ttagtcaatttagtccttaatgttaagatattagagttaaatttatggattttcctatactt |
267 |
Q |
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| T |
25347250 |
ttagtcaatttagtccttaatgttaagatattagagttaaatttatggattttcctatactt |
25347311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 25347318 - 25347408
Alignment:
| Q |
333 |
caaaaattgatatttgcagttttttatttcaattagaaatttaagctagttggaatccttaataaaattcgagtaattagtgcaacaagtt |
423 |
Q |
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| T |
25347318 |
caaaaattgatatttgcagttttttatttcaattagaaatttaagctagttggaatccttaataaaattcgagtaattagtgcaacaagtt |
25347408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 44454593 - 44454524
Alignment:
| Q |
152 |
aatttaaaccctaaactatgtaaaaatagtaattaatcactaaagtatataaaattagtcaatttagtcc |
221 |
Q |
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| T |
44454593 |
aatttaactcctaaacaatataaatataataactagtcactaaagtatataaaattcatcaatttagtcc |
44454524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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