View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19465_high_9 (Length: 214)
Name: NF19465_high_9
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19465_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 26914671 - 26914494
Alignment:
| Q |
18 |
caaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggc |
117 |
Q |
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| T |
26914671 |
caaagggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggc |
26914572 |
T |
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| Q |
118 |
aatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgttt |
195 |
Q |
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| T |
26914571 |
aatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgttt |
26914494 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 51182416 - 51182329
Alignment:
| Q |
18 |
caaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagta |
105 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
51182416 |
caaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgagta |
51182329 |
T |
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