View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19465_low_1 (Length: 677)

Name: NF19465_low_1
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19465_low_1
NF19465_low_1
[»] chr8 (6 HSPs)
chr8 (1-677)||(3134041-3134717)
chr8 (109-187)||(7918413-7918491)
chr8 (147-225)||(9956819-9956897)
chr8 (143-227)||(11795077-11795161)
chr8 (167-228)||(13652199-13652260)
chr8 (167-228)||(13710842-13710903)
[»] chr2 (9 HSPs)
chr2 (165-227)||(3284948-3285010)
chr2 (165-227)||(13189409-13189472)
chr2 (109-227)||(40158703-40158821)
chr2 (144-228)||(22681187-22681271)
chr2 (198-228)||(1625884-1625914)
chr2 (95-217)||(28933819-28933940)
chr2 (15-55)||(36370969-36371009)
chr2 (139-203)||(37034031-37034095)
chr2 (121-209)||(43065429-43065517)
[»] chr5 (4 HSPs)
chr5 (165-226)||(37588383-37588444)
chr5 (165-226)||(37526222-37526283)
chr5 (165-226)||(37690659-37690721)
chr5 (165-210)||(40205097-40205142)
[»] chr3 (6 HSPs)
chr3 (165-226)||(14548744-14548805)
chr3 (165-227)||(1816568-1816630)
chr3 (109-187)||(21574515-21574593)
chr3 (166-228)||(21661498-21661560)
chr3 (167-228)||(36646407-36646468)
chr3 (165-228)||(2318628-2318692)
[»] chr4 (2 HSPs)
chr4 (179-228)||(10192268-10192317)
chr4 (143-227)||(7694011-7694095)
[»] chr1 (10 HSPs)
chr1 (143-216)||(27963371-27963444)
chr1 (143-228)||(30371132-30371217)
chr1 (198-230)||(33976161-33976193)
chr1 (144-227)||(15558202-15558285)
chr1 (165-228)||(25005820-25005883)
chr1 (125-186)||(4699598-4699659)
chr1 (116-228)||(17269234-17269346)
chr1 (143-219)||(27887119-27887195)
chr1 (143-219)||(30257676-30257752)
chr1 (167-219)||(51957408-51957460)
[»] chr7 (8 HSPs)
chr7 (169-225)||(24895343-24895399)
chr7 (15-55)||(29286803-29286843)
chr7 (144-228)||(38010698-38010782)
chr7 (165-227)||(3610763-3610825)
chr7 (167-228)||(44821943-44822004)
chr7 (198-226)||(10453980-10454008)
chr7 (176-228)||(18350741-18350793)
chr7 (169-225)||(24909651-24909707)
[»] scaffold0012 (1 HSPs)
scaffold0012 (143-224)||(38581-38661)
[»] chr6 (2 HSPs)
chr6 (95-184)||(30863274-30863363)
chr6 (200-228)||(33828630-33828658)


Alignment Details
Target: chr8 (Bit Score: 665; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 3134041 - 3134717
Alignment:
Q  1 atggtaataaacaattttcagcttatttccataagcttgtcaaaataacttatggacctatctagattgacttatttgagagtttgtcttctatcataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134041 atggtaataaacaattttcagcttatttccataagcttgtcaaaataacttatggacctatctagattgacttatttgagagtttgtcttctatcataaa 3134140  T
Q  101 catttgcaagactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttga 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134141 catttgcaagactgtttggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttga 3134240  T
Q  201 aaacaacttataacttatacgaaaacaacaatttaacataagcaaagtaaagaaaacacgaacctgaagcgtggcaacagatgaaccatcagtgagaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134241 aaacaacttataacttatacgaaaacaacaatttaacataagcaaagtaaagaaaacacgaacctgaagcgtggcaacagatgaaccatcagtgagaagt 3134340  T
Q  301 agataaacggtggaagatttaggaggtaaagttctaggaataggagaatcacgcaatttcttgcgagacacgtaactgcttccacccaaaacttccatta 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134341 agataaacggtggaagatttgggaggtaaagttctaggaataggagaatcacgcaatttcttgcgagacacgtaactgcttccacccaaaacttccatta 3134440  T
Q  401 tattacgaatcaaaggaatcctagactgaagaatctctacacatgacacgtctttcgccggtgttatatcatcgtcggccgtcaatgccggcggaggtgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134441 tattacgaatcaaaggaatcctagactgaagaatctctacacatgacacgtctttcgccggtgttatatcatcgtcggccgtcaatgccggcggaggtgg 3134540  T
Q  501 tgaagatttctcgacttcctttgatgacttcacccatccgcccaccaccactctttgtcctataaactccgaaccgccgtcggttcggtctagaagaagt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3134541 tgaagatttctcgacttcctttgatgacttcacccatccgcccaccaccactctttgtcctataaactccgaaccgccgtcggttcggtctagaaaaagt 3134640  T
Q  601 gtttttaattgaacccggttggagtatttaaaaggagttaaaagactcaagtgttgagaattgggttcaactgaacc 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3134641 gtttttaattgaacccggttggagtatttaaaaggagttaaaagactcaagtgttgagaattgggttcaactgaacc 3134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 7918413 - 7918491
Alignment:
Q  109 agactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctcca 187  Q
    |||||| |||| ||||||||||||||  | |||||||||||||||||   ||||| | |||||||| ||||||||||||    
T  7918413 agactgtttgggagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctcca 7918491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 9956819 - 9956897
Alignment:
Q  147 tgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaa 225  Q
    ||||||||| ||||||  |||||||||  ||||| ||||||  ||| ||| |||||||||||||||||||||| |||||    
T  9956819 tgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaacaacttataacttataggaaaa 9956897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 11795161 - 11795077
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    ||||||| ||||||  ||||  |||||||||| |||||||||||| ||||  || ||||| || ||||||||||||| |||||||    
T  11795161 gacatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaaca 11795077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 13652260 - 13652199
Alignment:
Q  167 cttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||  ||||||||||||||||  || | ||||||| |||||||||||| ||||||||    
T  13652260 cttatttccttaagctctccagaatagcttataaaaacaatttataacttatatgaaaacaa 13652199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 13710903 - 13710842
Alignment:
Q  167 cttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||  ||||||||||||||||  || | ||||||| |||||||||||| ||||||||    
T  13710903 cttatttccttaagctctccagaatagcttataaaaacaatttataacttatatgaaaacaa 13710842  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 3284948 - 3285010
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||| |||||||||    
T  3284948 agcttatttctataaactctccgggatatattatgaaaacaacttataaattacacgaaaaca 3285010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 13189409 - 13189472
Alignment:
Q  165 agcttatttctataagctctccagaatatattt-tgaaaacaacttataacttatacgaaaaca 227  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||||||||||| | |||||||    
T  13189409 agcttatttccataagctctccataatatttttatgaaaacaacttataacttacatgaaaaca 13189472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 40158821 - 40158703
Alignment:
Q  109 agactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaact 208  Q
    |||||||||||  || ||||||||||    ||| |||||||| |||| | ||||  |||||| ||  |||||||||||||||||  || |||||||||||    
T  40158821 agactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaacaact 40158722  T
Q  209 tataacttatacgaaaaca 227  Q
    |||  ||||||||||||||    
T  40158721 tattgcttatacgaaaaca 40158703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 22681187 - 22681271
Alignment:
Q  144 acatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||||||   |||| ||||||||||| ||||| |||| || ||| ||| |||||||| |||||| |||||| ||||||||    
T  22681187 acatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaa 22681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 1625914 - 1625884
Alignment:
Q  198 tgaaaacaacttataacttatacgaaaacaa 228  Q
    |||||||||||||||||||||||||||||||    
T  1625914 tgaaaacaacttataacttatacgaaaacaa 1625884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 28933940 - 28933819
Alignment:
Q  95 cataaacatttgcaagactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatata 194  Q
    |||||||||||  ||| ||| |||| ||||||||||||||  | ||| | |||||||||| ||  |||| | ||||||||||| ||||||| || |||      
T  28933940 cataaacatttataagtctgtttggaagagcttatgaaaacaacttatggcatgttcatagctgttttcaa-cttatttctatcagctctctaggatagc 28933842  T
Q  195 ttttgaaaacaacttataactta 217  Q
    || ||||||||| ||||||||||    
T  28933841 ttatgaaaacaatttataactta 28933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 36370969 - 36371009
Alignment:
Q  15 ttttcagcttatttccataagcttgtcaaaataacttatgg 55  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  36370969 ttttcagcttatttccataagctttacaatataacttatgg 36371009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 37034095 - 37034031
Alignment:
Q  139 ttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaa 203  Q
    |||||||||||| |||| | ||||  | ||||||||||||||||||||| ||||| || ||||||    
T  37034095 ttaagacatgtttataaattgttttcaacttatttctataagctctccataatatcttatgaaaa 37034031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 43065429 - 43065517
Alignment:
Q  121 agagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaactt 209  Q
    ||||||||||||||  | ||| ||||||| ||||| | ||||  |||||||||| ||||||||||||  |||  || ||||||||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaactt 43065517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 37588383 - 37588444
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaac 226  Q
    |||||||||| |||||||||||||||||  || ||||||||||||||| |||||| ||||||    
T  37588383 agcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaac 37588444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 37526222 - 37526283
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaac 226  Q
    |||||||||| ||||||||||||||| |  || ||||||||||||||| |||||| ||||||    
T  37526222 agcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatgaaaac 37526283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 37690659 - 37690721
Alignment:
Q  165 agcttatttctataagctctccagaatatattt-tgaaaacaacttataacttatacgaaaac 226  Q
    |||||||||| |||||||||||| ||||  ||| ||||||||||||||| |||||| ||||||    
T  37690659 agcttatttccataagctctccataataactttatgaaaacaacttatagcttatatgaaaac 37690721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 40205097 - 40205142
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaactta 210  Q
    |||||||||||||||||||||||| |||  || |||||||||||||    
T  40205097 agcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 14548744 - 14548805
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaac 226  Q
    |||||||||| |||||||||||||||||  || ||||||||||||||| |||||| ||||||    
T  14548744 agcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaac 14548805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 1816630 - 1816568
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    |||||||||  ||||||||||||| |||  || ||||||||||||||| ||||||| ||||||    
T  1816630 agcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaaca 1816568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 21574593 - 21574515
Alignment:
Q  109 agactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctcca 187  Q
    |||||| |||| ||||||||||||||  | ||| |||||||||||||   | || ||||||||||| ||||||||||||    
T  21574593 agactgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctcca 21574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 21661560 - 21661498
Alignment:
Q  166 gcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    |||||||| ||||||||||| |||||| ||| ||||||||| ||| ||||| | |||||||||    
T  21661560 gcttatttttataagctctctagaatagattatgaaaacaatttagaacttgtgcgaaaacaa 21661498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 36646407 - 36646468
Alignment:
Q  167 cttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||||||| ||||| || |||  || ||||||||| |||||||||||| ||||||||    
T  36646407 cttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaacaa 36646468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 2318692 - 2318628
Alignment:
Q  165 agcttatttctataagctctcc-agaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    |||||||||||||||||||||| ||||||  || | |||||||||||||  ||||| ||||||||    
T  2318692 agcttatttctataagctctccaagaataacttataaaaacaacttatagtttatatgaaaacaa 2318628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 10192317 - 10192268
Alignment:
Q  179 agctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||||||    
T  10192317 agctctccaggatagcttttgaaaacaacttataacttatatgaaaacaa 10192268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 7694011 - 7694095
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    ||||||||||||| | ||||  |||||||||| |||| |||||||| |||  || |||||||| |||||| ||||||| ||||||    
T  7694011 gacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaaca 7694095  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 27963371 - 27963444
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataactt 216  Q
    ||||||| ||||| | |||| |||||||||| ||||||||||||| ||||  || ||||||||||||| |||||    
T  27963371 gacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacaacttagaactt 27963444  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 30371217 - 30371132
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||| ||||| | ||||  |||||||||| ||| |||||||| ||| | || ||||||||||||||| |||||| ||||||||    
T  30371217 gacatgtccataagttgttttcagcttatttcaatacgctctccaaaatgtcttatgaaaacaacttatagcttatatgaaaacaa 30371132  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 33976193 - 33976161
Alignment:
Q  198 tgaaaacaacttataacttatacgaaaacaaca 230  Q
    |||||||||||||||||||||||||||||||||    
T  33976193 tgaaaacaacttataacttatacgaaaacaaca 33976161  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 15558285 - 15558202
Alignment:
Q  144 acatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    ||||| |||||| | ||||  |||||||||||||||| |||| || |||| || |||||||| |||||||||| ||| ||||||    
T  15558285 acatgctcataagttgttttcagcttatttctataagttctctaggatatcttatgaaaacagcttataacttttacaaaaaca 15558202  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 25005820 - 25005883
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||| ||| |||||||||||||| |||  || ||||||||||||||| |||||| ||||||||    
T  25005820 agcttgtttttataagctctccaggatagcttatgaaaacaacttatagcttatatgaaaacaa 25005883  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 4699598 - 4699659
Alignment:
Q  125 cttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctcc 186  Q
    ||||||||||  | ||| |||||||||||||   |||| |||||||||||||||||||||||    
T  4699598 cttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataagctctcc 4699659  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 17269346 - 17269234
Alignment:
Q  116 ttggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataact 215  Q
    ||||||| |||||||||||    ||| ||||||||||| | | |||| || |||||| |  |||||||||||| |||  || ||||||||||||||  ||    
T  17269346 ttggtagtgcttatgaaaataccttatgacatgttcatgagttgtttttaacttattaccgtaagctctccaggatagcttatgaaaacaacttattgct 17269247  T
Q  216 tatacgaaaacaa 228  Q
    |||| ||||||||    
T  17269246 tatatgaaaacaa 17269234  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 27887119 - 27887195
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttata 219  Q
    ||||||| ||||| | |||| |||||||||| |||| ||||||||  |||  || ||||||||||||||| ||||||    
T  27887119 gacatgtccataaattgtttttagcttatttttatatgctctccatgatagtttatgaaaacaacttatagcttata 27887195  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 30257752 - 30257676
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttata 219  Q
    |||||||||||||   ||||  ||||||||||||||||| |||||| |||  || ||||||||||||| | ||||||    
T  30257752 gacatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttata 30257676  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 51957408 - 51957460
Alignment:
Q  167 cttatttctataagctctccagaatatattttgaaaacaacttataacttata 219  Q
    ||||||||| |||| |||||||||||  || ||||||||| ||||||||||||    
T  51957408 cttatttctgtaagttctccagaataacttatgaaaacaatttataacttata 51957460  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 24895399 - 24895343
Alignment:
Q  169 tatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaa 225  Q
    |||||| |||||||||||| ||||| || ||||||||||||||| |||||| |||||    
T  24895399 tatttccataagctctccacaatatcttgtgaaaacaacttatagcttatatgaaaa 24895343  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 29286843 - 29286803
Alignment:
Q  15 ttttcagcttatttccataagcttgtcaaaataacttatgg 55  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  29286843 ttttcagcttatttacataagcttttcaaaataacttatgg 29286803  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 38010782 - 38010698
Alignment:
Q  144 acatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||||||   |||| ||||||||||| ||||| |||| || ||| ||| |||||||| |||||| |||||| ||||||||    
T  38010782 acatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaa 38010698  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 3610763 - 3610825
Alignment:
Q  165 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 227  Q
    ||||||||||||||||||||| || |||  ||  |||||||||||||| ||||||| ||||||    
T  3610763 agcttatttctataagctctctaggatagtttacgaaaacaacttatagcttataccaaaaca 3610825  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 44822004 - 44821943
Alignment:
Q  167 cttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    |||||||  ||||| |||||||||||  || |||||||| |||||||||||||| |||||||    
T  44822004 cttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaa 44821943  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 10453980 - 10454008
Alignment:
Q  198 tgaaaacaacttataacttatacgaaaac 226  Q
    |||||||||||||||||||||||||||||    
T  10453980 tgaaaacaacttataacttatacgaaaac 10454008  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 18350741 - 18350793
Alignment:
Q  176 ataagctctccagaatatattttgaaaacaacttataacttatacgaaaacaa 228  Q
    ||||||||||||  |||  || |||||||| ||||||||||||||||||||||    
T  18350741 ataagctctccatgatagcttatgaaaacagcttataacttatacgaaaacaa 18350793  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 24909707 - 24909651
Alignment:
Q  169 tatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaa 225  Q
    |||||| | |||||||||| ||||| || ||||||||||||||| |||||| |||||    
T  24909707 tatttccacaagctctccacaatatcttatgaaaacaacttatagcttatatgaaaa 24909651  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 38661 - 38581
Alignment:
Q  143 gacatgttcataactagtttctagcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaa 224  Q
    ||||||| ||||| | ||||||| |||||||| |||||| ||||||||||  || | |||||| |||||||||||| |||||    
T  38661 gacatgtccataagttgtttctaacttatttc-ataagcactccagaataggttataaaaacagcttataacttatgcgaaa 38581  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 30863363 - 30863274
Alignment:
Q  95 cataaacatttgcaagactgattggtagagcttatgaaaaagagttaagacatgttcataactagtttctagcttatttctataagctct 184  Q
    |||||||| |||  |||||  |||||||||||||||||||  | ||| ||||||| ||||| | ||||  |||||| |||||||||||||    
T  30863363 cataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagctct 30863274  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 33828658 - 33828630
Alignment:
Q  200 aaaacaacttataacttatacgaaaacaa 228  Q
    |||||||||||||||||||||||||||||    
T  33828658 aaaacaacttataacttatacgaaaacaa 33828630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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