View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19465_low_2 (Length: 456)
Name: NF19465_low_2
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19465_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 31038529 - 31038962
Alignment:
| Q |
18 |
gatgttttatcattgatgcatgtaaatttgtaaatttctcatcaagcaaacaaaaaacatagacaaatcattctcactacattaaaataaatacgctaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038529 |
gatgttttatcattgatgcatgtaaatttgtaaatttctcatcaagcaaacaaaaaacatagacaaatcattctcactacattaaaataaatacgctaga |
31038628 |
T |
|
| Q |
118 |
aaatatatgtaattgaataaaatacaaatgatgtaataaccaaatcatcatttcctaagatttaaactcgcaaaatatcatacaatgaaagtaaaagctt |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038629 |
aaatatctgtaattgaataaaatacaaataatgtaataaccaaatcataatttgctaagatttaaactcgcaaaatatcatacaatgaaagtaaaagctt |
31038728 |
T |
|
| Q |
218 |
cccttgaactcagccagcgggtgagttgcagtctcgtagcagcaatgatctacacgacaaactggtaaatttggagcaaggcaacagcttgagtgggaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31038729 |
cccttgaactcagccagcgggtgagttgcagtctcgtagcagcaatgatctacacgacaaactggtaaatttgcagcaaggcaacagcttgagtgggaaa |
31038828 |
T |
|
| Q |
318 |
agtgttccacaaagtctaaagttgaccgacatttgaaactcgtttaaaatttcgacaacaaatgatcatcgtcacatttaattaagtagaagtttaagat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038829 |
agtgttccacaaagtctaaagttgaccgacatttgaaactcgtttaaaatttcgacaacaaatgatcatcgtcacatttaattaagtagaagtttaagat |
31038928 |
T |
|
| Q |
418 |
cctccacgtccttatggttgtgacctttgcttct |
451 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |
|
|
| T |
31038929 |
cctccacgtccttatggttgtgaccgttgattct |
31038962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University