View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19465_low_3 (Length: 383)

Name: NF19465_low_3
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19465_low_3
NF19465_low_3
[»] chr5 (1 HSPs)
chr5 (24-383)||(26914911-26915273)
[»] chr1 (1 HSPs)
chr1 (9-383)||(51182648-51183007)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 24 - 383
Target Start/End: Complemental strand, 26915273 - 26914911
Alignment:
Q  24 ctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggatt 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26915273 ctgatgatcataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctgatttcatgttttggattttttattgctggatt 26915174  T
Q  124 gcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgtt 223  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26915173 gcccaaaggtgcgatgttaagatgaaaacttgttcctgaagagtctaattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgtt 26915074  T
Q  224 ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaaga---ttatctcgttttcttgatgtacctgactctgaatgtatat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  26915073 ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattattatctcgttttcttgatgtacctgactctgaatgtatat 26914974  T
Q  321 gaaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgct 383  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26914973 ggaatttaggctctccttgcaataatggatagtcctctttgcttgtctggtagagtaagcgct 26914911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 51183007 - 51182648
Alignment:
Q  9 cgaagaatatgaatgctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggatt 108  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  51183007 cgaaaaatatgaatcctgatgattataggccagatattgttcatcaggttagccactgttttcattactttgacaatgag--------atgttttggatt 51182916  T
Q  109 ttttattgctggattgcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttat 208  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |        || || |||||||||||    
T  51182915 ttttattgctggattgcccaaaggcgcgacgttgagatgaaaacttgttcttgaagagtctaattacaacctaac--------ttcctctgaatagttat 51182824  T
Q  209 attctgttttatgttccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaag---attatctcgttttcttgatgtacctg 305  Q
    ||| ||||||||||||||||||||||||||||||||||| |  | | | | | |||  |||||||||||||   |||||||| ||||||||||||||||     
T  51182823 attttgttttatgttccattgtagttttcttagaaaagtat--tattataaaaccctgaaaagtttgaaagattattatctcattttcttgatgtaccta 51182726  T
Q  306 actctgaatgtatatgaaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgct 383  Q
    |||||||||||||||| | |||||||||||||||||||| || ||||| | ||||||||| |||||||||||||||||    
T  51182725 actctgaatgtatatggattttaggctctccttgcaatattgagtagtgcactttgcttggctggtagagtaagcgct 51182648  T

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