View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19465_low_4 (Length: 372)

Name: NF19465_low_4
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19465_low_4
NF19465_low_4
[»] chr4 (38 HSPs)
chr4 (1-145)||(43894154-43894299)
chr4 (143-243)||(43894356-43894456)
chr4 (283-357)||(43894495-43894569)
chr4 (1-142)||(2293450-2293592)
chr4 (1-142)||(44302769-44302911)
chr4 (1-116)||(86852-86968)
chr4 (1-138)||(35787845-35787983)
chr4 (1-138)||(39592218-39592356)
chr4 (43-138)||(29687907-29688003)
chr4 (1-139)||(36604769-36604908)
chr4 (2-59)||(43419384-43419441)
chr4 (1-69)||(2310781-2310849)
chr4 (2-74)||(34439654-34439726)
chr4 (1-138)||(11094575-11094711)
chr4 (1-99)||(29663691-29663790)
chr4 (17-139)||(38418945-38419068)
chr4 (290-340)||(18091878-18091928)
chr4 (290-340)||(38032195-38032245)
chr4 (143-204)||(2293328-2293389)
chr4 (2-71)||(5687225-5687294)
chr4 (1-46)||(15787001-15787046)
chr4 (2-78)||(30683016-30683093)
chr4 (308-361)||(38418693-38418746)
chr4 (288-340)||(2293205-2293257)
chr4 (200-240)||(2293304-2293344)
chr4 (2-74)||(11113792-11113864)
chr4 (1-69)||(33377363-33377431)
chr4 (1-33)||(37559047-37559079)
chr4 (1-69)||(52880863-52880931)
chr4 (2-88)||(34438456-34438543)
chr4 (1-35)||(15787535-15787569)
chr4 (2-40)||(26393155-26393193)
chr4 (1-46)||(27408812-27408857)
chr4 (1-33)||(1273468-1273500)
chr4 (1-33)||(26376378-26376410)
chr4 (1-69)||(29833421-29833489)
chr4 (1-33)||(37560334-37560366)
chr4 (1-33)||(46796061-46796093)
[»] scaffold0084 (3 HSPs)
scaffold0084 (1-145)||(13126-13271)
scaffold0084 (143-240)||(12972-13069)
scaffold0084 (283-357)||(12856-12930)
[»] chr3 (53 HSPs)
chr3 (1-142)||(17350027-17350169)
chr3 (1-142)||(39133066-39133208)
chr3 (1-142)||(7483450-7483592)
chr3 (1-142)||(32979137-32979279)
chr3 (1-142)||(11219479-11219621)
chr3 (290-357)||(39133407-39133474)
chr3 (1-138)||(53808367-53808505)
chr3 (288-357)||(17349761-17349830)
chr3 (1-69)||(32974222-32974290)
chr3 (290-340)||(28776737-28776787)
chr3 (307-357)||(31638490-31638540)
chr3 (143-204)||(17349906-17349967)
chr3 (1-69)||(7583519-7583587)
chr3 (1-84)||(8371269-8371353)
chr3 (1-69)||(40501857-40501925)
chr3 (52-138)||(47765538-47765625)
chr3 (49-142)||(34902919-34903013)
chr3 (294-340)||(47430959-47431005)
chr3 (143-204)||(39133268-39133329)
chr3 (1-69)||(5416247-5416315)
chr3 (1-33)||(26798941-26798973)
chr3 (1-69)||(32973188-32973256)
chr3 (1-69)||(39287519-39287587)
chr3 (1-33)||(41387468-41387500)
chr3 (2-74)||(47855332-47855404)
chr3 (1-69)||(48035323-48035391)
chr3 (1-69)||(53047946-53048014)
chr3 (1-69)||(53049036-53049104)
chr3 (2-69)||(1301082-1301149)
chr3 (6-69)||(11481955-11482018)
chr3 (288-331)||(24753266-24753309)
chr3 (2-69)||(51825620-51825687)
chr3 (290-340)||(21728196-21728246)
chr3 (44-142)||(31638210-31638311)
chr3 (290-340)||(50879983-50880033)
chr3 (2-134)||(12062317-12062450)
chr3 (1-46)||(19253024-19253069)
chr3 (2-35)||(23886750-23886783)
chr3 (157-203)||(31638374-31638422)
chr3 (1-74)||(32980446-32980519)
chr3 (1-46)||(51401373-51401418)
chr3 (1-69)||(2124078-2124146)
chr3 (1-69)||(7821985-7822053)
chr3 (1-33)||(8372651-8372683)
chr3 (1-33)||(10987688-10987720)
chr3 (1-88)||(25583163-25583251)
chr3 (1-33)||(29536763-29536795)
chr3 (2-46)||(43345369-43345413)
chr3 (1-33)||(47766986-47767018)
chr3 (1-33)||(48252982-48253014)
chr3 (1-69)||(52292643-52292711)
chr3 (1-69)||(52293522-52293590)
chr3 (1-69)||(55443549-55443617)
[»] scaffold0046 (3 HSPs)
scaffold0046 (143-240)||(23681-23775)
scaffold0046 (283-357)||(23817-23891)
scaffold0046 (1-43)||(23455-23497)
[»] chr5 (18 HSPs)
chr5 (1-142)||(21387686-21387828)
chr5 (2-142)||(18693748-18693889)
chr5 (1-107)||(7345350-7345457)
chr5 (69-138)||(7426759-7426828)
chr5 (1-69)||(20991648-20991716)
chr5 (1-69)||(22650627-22650695)
chr5 (2-88)||(42510164-42510251)
chr5 (1-59)||(15510272-15510330)
chr5 (290-340)||(19229848-19229898)
chr5 (1-70)||(15509244-15509313)
chr5 (1-74)||(15613554-15613627)
chr5 (1-61)||(4567000-4567060)
chr5 (1-69)||(4567973-4568041)
chr5 (1-69)||(32521735-32521803)
chr5 (2-33)||(1273139-1273170)
chr5 (1-74)||(5384340-5384413)
chr5 (2-59)||(22819558-22819615)
chr5 (1-33)||(18678025-18678057)
[»] chr1 (39 HSPs)
chr1 (1-142)||(51218891-51219033)
chr1 (1-142)||(26056072-26056214)
chr1 (1-138)||(44977270-44977408)
chr1 (285-340)||(51468674-51468729)
chr1 (43-120)||(27689374-27689452)
chr1 (2-138)||(50678416-50678550)
chr1 (1-74)||(13641306-13641379)
chr1 (1-69)||(48935109-48935177)
chr1 (2-121)||(49141442-49141562)
chr1 (290-340)||(7111254-7111304)
chr1 (17-142)||(30551514-30551640)
chr1 (2-138)||(9633825-9633962)
chr1 (2-142)||(23082051-23082192)
chr1 (1-69)||(35683104-35683172)
chr1 (2-99)||(14169669-14169767)
chr1 (290-340)||(17244476-17244526)
chr1 (290-340)||(52759661-52759711)
chr1 (143-204)||(51218769-51218830)
chr1 (317-361)||(14764624-14764668)
chr1 (2-74)||(36511325-36511397)
chr1 (288-340)||(51218652-51218704)
chr1 (2-69)||(2237977-2238044)
chr1 (2-69)||(3979312-3979379)
chr1 (2-116)||(22766771-22766886)
chr1 (2-108)||(37624529-37624636)
chr1 (2-59)||(45570368-45570425)
chr1 (1-69)||(1061451-1061519)
chr1 (1-69)||(2236862-2236930)
chr1 (1-33)||(2971748-2971780)
chr1 (1-33)||(13930710-13930742)
chr1 (1-33)||(14071238-14071270)
chr1 (1-33)||(14390307-14390339)
chr1 (1-140)||(21277043-21277183)
chr1 (1-33)||(25786017-25786049)
chr1 (1-57)||(34532713-34532769)
chr1 (1-69)||(35684202-35684269)
chr1 (2-74)||(40811245-40811317)
chr1 (1-33)||(47411483-47411515)
chr1 (200-240)||(51218745-51218785)
[»] chr8 (39 HSPs)
chr8 (1-142)||(21670113-21670255)
chr8 (1-139)||(44103224-44103363)
chr8 (37-142)||(21961908-21962014)
chr8 (290-357)||(39325505-39325572)
chr8 (1-138)||(10052153-10052291)
chr8 (143-240)||(13513671-13513768)
chr8 (143-240)||(13603204-13603301)
chr8 (1-142)||(13513469-13513611)
chr8 (1-142)||(13603002-13603144)
chr8 (37-142)||(39325759-39325865)
chr8 (1-54)||(43386716-43386769)
chr8 (1-116)||(39546628-39546744)
chr8 (2-138)||(36756114-36756251)
chr8 (2-142)||(37276168-37276309)
chr8 (44-142)||(13363503-13363602)
chr8 (1-121)||(117097-117218)
chr8 (2-138)||(7486127-7486264)
chr8 (143-204)||(44103098-44103159)
chr8 (2-121)||(13366996-13367116)
chr8 (200-240)||(21670360-21670400)
chr8 (2-46)||(24069468-24069512)
chr8 (288-340)||(44102975-44103027)
chr8 (2-140)||(20308655-20308794)
chr8 (2-140)||(21095288-21095427)
chr8 (143-186)||(21962074-21962117)
chr8 (1-68)||(29739643-29739710)
chr8 (9-99)||(35943965-35944056)
chr8 (2-69)||(45384290-45384357)
chr8 (1-67)||(43277922-43277988)
chr8 (1-46)||(3237466-3237511)
chr8 (1-74)||(13514859-13514932)
chr8 (1-74)||(13604392-13604465)
chr8 (1-74)||(37274936-37275009)
chr8 (1-33)||(24068379-24068411)
chr8 (1-140)||(36070227-36070367)
chr8 (1-33)||(37323397-37323429)
chr8 (1-33)||(37472452-37472484)
chr8 (1-33)||(38591042-38591074)
chr8 (1-33)||(41867951-41867983)
[»] chr2 (30 HSPs)
chr2 (144-240)||(14714744-14714840)
chr2 (37-142)||(14714577-14714683)
chr2 (2-138)||(26205063-26205200)
chr2 (1-138)||(12852935-12853073)
chr2 (2-142)||(4512156-4512297)
chr2 (1-113)||(23177723-23177836)
chr2 (1-113)||(23588980-23589093)
chr2 (1-138)||(29424541-29424679)
chr2 (1-69)||(2305589-2305657)
chr2 (144-204)||(14714912-14714972)
chr2 (69-138)||(7983624-7983693)
chr2 (283-340)||(14715037-14715094)
chr2 (2-59)||(15850668-15850725)
chr2 (1-61)||(3665273-3665333)
chr2 (57-116)||(45047447-45047507)
chr2 (69-124)||(3532312-3532367)
chr2 (6-69)||(4628936-4628999)
chr2 (2-88)||(8537062-8537149)
chr2 (1-54)||(35799561-35799615)
chr2 (143-204)||(4512357-4512418)
chr2 (73-138)||(21010427-21010492)
chr2 (1-69)||(2306660-2306728)
chr2 (1-33)||(2581852-2581884)
chr2 (70-142)||(3528190-3528262)
chr2 (78-142)||(6708904-6708968)
chr2 (2-77)||(7037016-7037092)
chr2 (2-34)||(7038366-7038398)
chr2 (1-33)||(12958465-12958497)
chr2 (1-69)||(41313266-41313334)
chr2 (1-33)||(42027242-42027274)
[»] scaffold0015 (2 HSPs)
scaffold0015 (37-142)||(207723-207829)
scaffold0015 (143-186)||(207620-207663)
[»] scaffold0051 (2 HSPs)
scaffold0051 (1-142)||(39826-39968)
scaffold0051 (1-74)||(22176-22249)
[»] chr7 (37 HSPs)
chr7 (2-142)||(24494976-24495117)
chr7 (290-357)||(35314914-35314981)
chr7 (290-340)||(9392576-9392626)
chr7 (1-138)||(38406067-38406204)
chr7 (1-93)||(4857250-4857343)
chr7 (1-59)||(36673845-36673903)
chr7 (290-340)||(37236085-37236135)
chr7 (143-204)||(24494853-24494914)
chr7 (1-33)||(4858379-4858411)
chr7 (70-138)||(14109000-14109068)
chr7 (70-138)||(14418957-14419025)
chr7 (200-240)||(24494829-24494869)
chr7 (1-69)||(30223975-30224043)
chr7 (1-69)||(34558300-34558368)
chr7 (143-199)||(35315046-35315102)
chr7 (1-69)||(41126288-41126356)
chr7 (1-68)||(24873597-24873664)
chr7 (2-69)||(33341348-33341415)
chr7 (8-71)||(36702947-36703010)
chr7 (2-69)||(48755547-48755614)
chr7 (290-340)||(13599040-13599090)
chr7 (290-340)||(43114858-43114908)
chr7 (2-99)||(46458681-46458779)
chr7 (69-138)||(4167569-4167638)
chr7 (1-46)||(25153707-25153752)
chr7 (1-46)||(41516366-41516411)
chr7 (1-69)||(2903093-2903161)
chr7 (1-33)||(17288255-17288287)
chr7 (1-33)||(18801264-18801296)
chr7 (1-33)||(19279647-19279679)
chr7 (1-33)||(22061830-22061862)
chr7 (1-33)||(22746355-22746387)
chr7 (1-33)||(33459578-33459610)
chr7 (1-33)||(35127859-35127891)
chr7 (1-69)||(35480256-35480324)
chr7 (2-46)||(36702827-36702871)
chr7 (1-33)||(43007684-43007716)
[»] scaffold1974 (1 HSPs)
scaffold1974 (1-113)||(582-695)
[»] scaffold1878 (1 HSPs)
scaffold1878 (1-113)||(579-692)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-113)||(9432-9545)
[»] scaffold0098 (2 HSPs)
scaffold0098 (70-139)||(41027-41096)
scaffold0098 (143-199)||(41159-41215)
[»] chr6 (12 HSPs)
chr6 (1-74)||(22299897-22299970)
chr6 (2-74)||(27438840-27438912)
chr6 (1-138)||(18139416-18139554)
chr6 (1-69)||(8447270-8447338)
chr6 (1-69)||(8456074-8456142)
chr6 (1-69)||(26584036-26584104)
chr6 (2-93)||(27440149-27440241)
chr6 (290-340)||(11801121-11801171)
chr6 (70-116)||(13507122-13507168)
chr6 (290-331)||(32348101-32348142)
chr6 (1-33)||(8412351-8412383)
chr6 (1-33)||(9927655-9927687)
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-74)||(48450-48522)
scaffold0003 (2-93)||(47120-47212)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-116)||(77130-77248)
[»] scaffold1550 (1 HSPs)
scaffold1550 (2-47)||(206-251)
[»] scaffold0177 (1 HSPs)
scaffold0177 (1-69)||(1804-1872)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-69)||(145868-145936)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 43894154 - 43894299
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  43894154 ctaactataaaatgtctcaatttggtcacataactatttttctgttacctcttttggtcatatccgttggtttttaacatcaaatgtctgaggtgaacca 43894253  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaatctt 145  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  43894254 tatttaaagatggtccacaatatgccctattaaattttttaatctt 43894299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 43894356 - 43894456
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatcca 242  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43894356 ctttagtgtcaaccactaacatctaataaaatccattcatcttcttcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatcca 43894455  T
Q  243 t 243  Q
    |    
T  43894456 t 43894456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 43894495 - 43894569
Alignment:
Q  283 catattctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  43894495 catattctttaatcactacacaatcatcattgtcatcttcatctatcgttatcaacgctcttcttcctaaatatt 43894569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2293592 - 2293450
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| |||| || |||||||| ||  | |||| |||| | |||| |||||| | ||||||| ||||||| ||||||||||||| || || ||    
T  2293592 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgttagtttttaaaatcaaatgtctgaagtgaatca 2293493  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  2293492 tatttaaagatggtccaccatatgccttattaaattttttaat 2293450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44302769 - 44302911
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| |||||||||||| |||||||| | |||| || ||||||||||||||| | ||||||| |||||||||| ||| | || |||| ||| |    
T  44302769 ctaactataaagtgtctcaatttgatcccataaattttctgccattacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaacta 44302868  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || ||||  || ||||||||||||||||    
T  44302869 tatttaaaggtggttcaccatagaccgtattaaattttttaat 44302911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 86852 - 86968
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||||||||||   ||||||||||||||||||| |||||| |||||  || |||||||| | ||||||| ||||||||||||||||||| |||| |||||    
T  86852 ctaactataaagcatctcaatttggtcccataaatattctgccgtttactgttttggtcttctccgttagtttttaacatcaaatgtctaaggtgaacca 86951  T
Q  100 tatttaaagatggtcca 116  Q
    | ||||||| |||||||    
T  86952 tgtttaaaggtggtcca 86968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 35787845 - 35787983
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||||||| ||||||||||||||||| | ||||  ||||  |  |||||||| | ||||||| ||||||||||||||||||| |||| || ||    
T  35787845 ctaactataaaatgtttcaatttggtcccataaatcttctgtcgtttaccgttttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatca 35787944  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    | ||||||| ||||||| ||||  |  ||||||||||||    
T  35787945 tgtttaaaggtggtccaccatagactttattaaattttt 35787983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39592356 - 39592218
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| |||||||| |||||||  ||  | ||||  ||||  || |||||||  | ||||||| ||||||||||||||||||| |||| | |||    
T  39592356 ctaactataaagtgtctcaaattggtccattatgtcttctgtcgtttactgttttggttctctccgttaatttttaacatcaaatgtctaaggtgagcca 39592257  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    | ||||||| ||||||||||||| || ||||||||||||    
T  39592256 tgtttaaaggtggtccatcatataccttattaaattttt 39592218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 29688003 - 29687907
Alignment:
Q  43 cgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||  ||  |||||||||||||| ||||||| | ||  || ||||||||||||    
T  29688003 cgttacctcttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaattttt 29687907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 36604908 - 36604769
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| |||| || |||||||| ||  | |||| |||||||||||||||||| | ||||||| ||||||| ||||||| ||| || | |||||    
T  36604908 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcctctccgttagtttttaatatcaaatatctaagatgaacca 36604809  T
Q  100 tatttaaagatggtccatcatatgccctattaaatttttt 139  Q
    |||| |||  ||| ||| |||||||| |||||| ||||||    
T  36604808 tattaaaaagtggcccaccatatgccttattaattttttt 36604769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 43419441 - 43419384
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    |||||||||| ||||||||||||||||| ||||| |||| ||||||||| ||||||||    
T  43419441 taactataaagtgtctcaatttggtcccttaactcttctgccgttacctattttggtc 43419384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2310849 - 2310781
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||||||||||||||| ||  | || | ||||||||||||||| || |||||||||    
T  2310849 ctaactataaaatgtctcaatttggtcccttatgtcttttgccgttacctcttttgatcctatccgtta 2310781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 34439726 - 34439654
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||||||| ||||||||||||||||| | |||| |||||  || |||||||||| ||||||| ||||    
T  34439726 taactataaaatgtttcaatttggtcccataaatcttctgccgtttactattttggtcatctccgttagtttt 34439654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11094575 - 11094711
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||| |||||||||| |||| | |||| |||||  || |||||||| | | ||||| ||||||||||||||||||| ||||  ||||    
T  11094575 ctaactataaagtgtcttaatttggtcctataaattttctgccgtttactgttttggtcctcttcgttagtttttaacatcaaatgtctaaggt--acca 11094672  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    | ||||||  |||| || ||||  || ||||||||||||    
T  11094673 tgtttaaatgtggttcaccatagaccttattaaattttt 11094711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29663691 - 29663790
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccg-ttatttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||  |  ||||| || | |||| ||| ||||||||| |||||||| |||| |||||    
T  29663691 ctaactataaattgtctcaatttggtcccataactcttctgccgtttaccattttgatcttttccgtttaattttaacattaaatgtctaaggtgaacca 29663790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 38419068 - 38418945
Alignment:
Q  17 tcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtcc 115  Q
    ||||||||||| ||||| | |||| |||||  || |||| ||||| ||||||| |||||||||| ||| || | || | ||||||||||| || ||||||    
T  38419068 tcaatttggtctcataagtcttctgccgtttactgttttagtcatctccgttagtttttaacattaaacgtttaagatgaaccatatttataggtggtcc 38418969  T
Q  116 atcatatgccctattaaatttttt 139  Q
    | |||||||| || ||||||||||    
T  38418968 accatatgccttactaaatttttt 38418945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 18091878 - 18091928
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | |||||||| |||||||||||||||| ||||||||    
T  18091878 tttaatcactacaccaccatcattgacatcttcatctatcatcatcaacac 18091928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 38032245 - 38032195
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | |||||||||||||||||| |||||| ||||||||    
T  38032245 tttaatcactacaccaccatcattgtcatcttcatttatcatcatcaacac 38032195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 2293389 - 2293328
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||||||| ||| ||| ||| ||||||||||| |||||||||| |||||| ||||||||||    
T  2293389 ctttactgtgaaccactcacacctaataaaatcgattcatcttcttcttccgtcatctcttc 2293328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 5687225 - 5687294
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttatt 71  Q
    |||||||||| ||||||||||||||||||||| | || | |||||  || |||||||||| |||||||||    
T  5687225 taactataaagtgtctcaatttggtcccataaatcttttgccgtttactattttggtcatctccgttatt 5687294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15787001 - 15787046
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||    
T  15787001 ctaactataaactgtctcaatttggtcccataacttttctgccgtt 15787046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 30683093 - 30683016
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaaca 78  Q
    |||||||||| ||||||||||||||||||||| | |||  ||||||  |||||||||| | ||||||| |||||||||    
T  30683093 taactataaagtgtctcaatttggtcccataaatcttcggccgttaattcttttggtcttctccgttagtttttaaca 30683016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 38418746 - 38418693
Alignment:
Q  308 atcattgtcatcttcatctatcattatcaacactcttcttcctaaatattcttc 361  Q
    ||||| |||||||||||||||||| |||||||  ||| ||||||||||||||||    
T  38418746 atcatcgtcatcttcatctatcatcatcaacatccttgttcctaaatattcttc 38418693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 2293257 - 2293205
Alignment:
Q  288 tctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    ||||||||||  |||||| ||||||||||||||||||||||||| || |||||    
T  2293257 tctttaatcatcacacaaccatcattgtcatcttcatctatcatcataaacac 2293205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 2293344 - 2293304
Alignment:
Q  200 tcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  2293344 tcttccgtcatctcttcatgatcttcaacaacaacttcatc 2293304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 11113792 - 11113864
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||| ||||||||||||||| ||||||| |||| |||||  |  |||||||||| ||||||| ||||    
T  11113792 taactataaagtgtctcaatttggtctcataactcttctgccgtttaccattttggtcatttccgttagtttt 11113864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33377431 - 33377363
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||| | |||||||    
T  33377431 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggtcctctccgtta 33377363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37559047 - 37559079
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||||||||||||    
T  37559047 ctaactataaaatgtctcaatttggtcccataa 37559079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52880863 - 52880931
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||  ||  | || | |||||||||||||||||| |||||||||    
T  52880863 ctaactataaagtgtctcaatttggtcctttatgtcttttgccgttacctcttttggtcctatccgtta 52880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 34438456 - 34438543
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtct 88  Q
    |||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||  | || |||| |||||||| ||||||||||    
T  34438456 taactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggttctctctgttagtttttaacctcaaatgtct 34438543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15787569 - 15787535
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataact 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  15787569 ctaactataaagtgtctcaatttggtcccataact 15787535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 26393193 - 26393155
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattct 40  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  26393193 taactataaagtgtctcaatttggtcccataactcttct 26393155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27408812 - 27408857
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||    
T  27408812 ctaactataaagtgtctcaatttggtcccataaatcttcttccgtt 27408857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1273500 - 1273468
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  1273500 ctaactataaagtgtctcaatttggtcccataa 1273468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26376378 - 26376410
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||| ||||||||||||||||||||    
T  26376378 ctaactataaaacgtctcaatttggtcccataa 26376410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29833421 - 29833489
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||| |||||||||||||||||||||||| ||  | || |  ||||||||||||||||| | |||||||    
T  29833421 ctaattataaaatgtctcaatttggtcccttatatcttttgtcgttacctcttttggtcctctccgtta 29833489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37560366 - 37560334
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  37560366 ctaactataaagtgtctcaatttggtcccataa 37560334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46796093 - 46796061
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  46796093 ctaactataaagtgtctcaatttggtcccataa 46796061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13271 - 13126
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttat-ttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||| |||  |||||||||||||||||| |||| |||||    
T  13271 ctaactataaaatgtctcaatttcgtcccataactcttcttccgttacctcttttggtcctatccattaggttttaacatcaaatgtctaaggtgaacca 13172  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaatctt 145  Q
    ||||||||||||||||| ||||| ||||| |||| |||||||||||    
T  13171 tatttaaagatggtccaccatataccctactaaaatttttaatctt 13126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 13069 - 12972
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13069 ctttattgtcaaccactaacatctaataaaatccattcatcttcttcttccctcatctcttccttcacttcttcatgatcttcaacaacaatttcatc 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 12930 - 12856
Alignment:
Q  283 catattctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12930 catattctttaatcactacacaaccatcattgtcatcttcatctatcattatcaacacccttcttcctaaatatt 12856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 17350169 - 17350027
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||| ||  | |||||| |||||||||||||||| | ||||||| ||||||||||||||||||| |||| |||||    
T  17350169 ctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaacca 17350070  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| ||||||| |||||||| || |||||||||||||    
T  17350069 tatttaaaggtggtccaccatatgccttactaaattttttaat 17350027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39133066 - 39133208
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||| ||  | ||||| ||||||||||||||||| | || |||| ||||||||||||||||||| |||| |||||    
T  39133066 ctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaacca 39133165  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| ||||||| |||||||| || |||||||||||||    
T  39133166 tatttaaaggtggtccaccatatgccttactaaattttttaat 39133208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7483592 - 7483450
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| |||| || |||||||| ||  | |||| |||||||||||||||||||| ||||||| ||||||||||||||| ||| |||| |||||    
T  7483592 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgttagtttttaacatcaaatatctaaggtgaacca 7483493  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||| |||  ||| ||| |||||||| |||||| |||||||||    
T  7483492 tattaaaaagtggcccaccatatgccttattaatttttttaat 7483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 32979137 - 32979279
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| |||||||||||| |||||||| | |||| |  ||||||||||||||| | ||||||| |||||||||| ||| | || |||| ||| |    
T  32979137 ctaactataaagtgtctcaatttgatcccataaattttctgcaattacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaacta 32979236  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || ||||  || ||||||||||||||||    
T  32979237 tatttaaaggtggttcaccatagaccgtattaaattttttaat 32979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 11219479 - 11219621
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||| ||| | | |||| |||||  || |||||||||| |||||||  |||||||||||||  ||| |||| |||||    
T  11219479 ctaactataaagtgtctcaatttggtctcatgagtcttctgccgtttactattttggtcatctccgttagattttaacatcaaaattctaaggtgaacca 11219578  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || ||||   | ||||||||||||||||    
T  11219579 tatttaaaggtggttcaccatagatcgtattaaattttttaat 11219621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 39133407 - 39133474
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||| |||||| |||||| ||||||||||||||||||| ||||||| |||||| |||||||||    
T  39133407 tttaatcaccacacaaccatcatcgtcatcttcatctatcattttcaacacccttctttctaaatatt 39133474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 53808367 - 53808505
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||| ||||||||||| | || |  ||||  || |||||||||| ||| ||| ||||||||||||||| ||| |||| || ||    
T  53808367 ctaactataaagtgtctcaatctggtcccataaatcttatgtcgtttactattttggtcatctccattagtttttaacatcaaatttctaaggtgaatca 53808466  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||| ||||| ||||||| ||||  || ||||||||||||    
T  53808467 tatctaaaggtggtccaccataaaccttattaaattttt 53808505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 17349830 - 17349761
Alignment:
Q  288 tctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||||| |||||| | ||||||| |||||||||||||||| ||||||| |||||| |||||||||    
T  17349830 tctttaatcaccacacaaccgtcattgtgatcttcatctatcattttcaacacccttctttctaaatatt 17349761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32974290 - 32974222
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| |||||||||||||||||||| |||||||    
T  32974290 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 32974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 28776737 - 28776787
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  28776737 tttaatcactacaccaccatcattgtcatcttcatctatcatcatcaacac 28776787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 31638490 - 31638540
Alignment:
Q  307 catcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  31638490 catcattgtcttcttcatctatcatcatcaacacccttcttcctaaatatt 31638540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 17349967 - 17349906
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||| ||| ||| ||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  17349967 ctttattgtgaaccactaacacctaataaaatacattcatcttcttcttccctcatctcttc 17349906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7583519 - 7583587
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||| | ||  | || | ||||||||||||||||||||||||||||    
T  7583519 ctaactataaagtgtctcaatttggtctcttatgtcttttaccgttacctcttttggtcatatccgtta 7583587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8371269 - 8371353
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaat 84  Q
    |||||||||||||||||||||||||| |||||| | |||| | |||  || |||||||| | ||||||| |||||||||||||||    
T  8371269 ctaactataaaatgtctcaatttggttccataaatcttctgcagtttactattttggtcctctccgttagtttttaacatcaaat 8371353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40501857 - 40501925
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||| ||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  40501857 ctaactataaaatatctcaatttggtcccttatgtcttttgccgttacctcttttggtcttatccgtta 40501925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 47765538 - 47765625
Alignment:
Q  52 ttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||| ||||||  |||||||||||||| ||||  || |||| |||||||    
T  47765538 ttttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagaccttattgaattttt 47765625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 34903013 - 34902919
Alignment:
Q  49 ctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||||||| ||||||| ||||||||| ||||||||| | || |||||||||||||| |||| || |||   || || |||||||||||||    
T  34903013 ctcttttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaat 34902919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 47431005 - 47430959
Alignment:
Q  294 atcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||    
T  47431005 atcactacaccaccatcattgtcatcttcatctatcatcatcaacac 47430959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 39133268 - 39133329
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||| ||| ||| ||||||| |||||||||| || |||||||| |||||||||||||||||    
T  39133268 ctttattgtgaaccactaacacctaataaaatacagtcatcttcttcttccctcatctcttc 39133329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5416247 - 5416315
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||||||||||||||| ||  | || |  |||||||||||||||||  ||||||||    
T  5416247 ctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcccatccgtta 5416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26798973 - 26798941
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||||||||||||    
T  26798973 ctaactataaaatgtctcaatttggtcccataa 26798941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32973188 - 32973256
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| |||||||||||||| ||| | |||||||    
T  32973188 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgtta 32973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39287519 - 39287587
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  39287519 ctaactataaagtgtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctctccgtta 39287587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41387500 - 41387468
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||||||||||||    
T  41387500 ctaactataaaatgtctcaatttggtcccataa 41387468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 47855404 - 47855332
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||| |||||||||||||||| |||| | |||| |||||  || |||||||| | ||||||||||||    
T  47855404 taactataaagtgtctcaatttggtcctataaatcttctgccgtttactattttggtcctctccgttattttt 47855332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48035391 - 48035323
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || | |||||||||||||||||| | |||||||    
T  48035391 ctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgtta 48035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 53047946 - 53048014
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  53047946 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 53049104 - 53049036
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  53049104 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53049036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 1301082 - 1301149
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||||||| ||||||||||||||||| ||  | || | |||||||||||||||||| |||| ||||    
T  1301082 taactataaagtgtctcaatttggtcccttatgtcttttaccgttacctcttttggtcctatctgtta 1301149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 11481955 - 11482018
Alignment:
Q  6 tataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||| ||||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  11481955 tataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 11482018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 24753309 - 24753266
Alignment:
Q  288 tctttaatcactacacaatcatcattgtcatcttcatctatcat 331  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||    
T  24753309 tctttaatcaccacacaactatcattgtcatcttcatctatcat 24753266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 51825687 - 51825620
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||||||| ||| ||||||||||||||||| | ||||  ||||  || ||||||||||||||||||    
T  51825687 taactataaagtgtttcaatttggtcccataaatcttctgtcgtttactattttggtcatatccgtta 51825620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 21728196 - 21728246
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||| ||||||||| | ||||||| ||||||||||||||||| ||||||||    
T  21728196 tttagtcactacaccaccatcattatcatcttcatctatcatcatcaacac 21728246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 31638210 - 31638311
Alignment:
Q  44 gttacctcttttggtcatatccgtta-tttttaacatcaaatgt--ctgaggttaaccatatttaaagatggtccatcatatgccctattaaatttttta 140  Q
    ||||||||||||| || | |||| || ||||||||||||||| |  || |||| |||||||||||||| ||||| | |||| ||| || |||||||||||    
T  31638210 gttacctcttttgatcctctccgctagtttttaacatcaaatatatctaaggtgaaccatatttaaaggtggtctaccatacgccttactaaatttttta 31638309  T
Q  141 at 142  Q
    ||    
T  31638310 at 31638311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 50879983 - 50880033
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| |  |||||||||||||||||||||||| || |||||    
T  50879983 tttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacac 50880033  T

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Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 12062450 - 12062317
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    ||||||| || ||||||||||||||||||| ||| || | | |||  || |||||||||| ||| ||| |||||||| | |||||||| |||| |||||     
T  12062450 taactattaagtgtctcaatttggtcccattactcttttgctgtttactattttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaa 12062351  T
Q  101 atttaaagatggtccatcatatgccctattaaat 134  Q
     |||| || || |||| ||||| || ||||||||    
T  12062350 ctttataggtgatccaccatataccttattaaat 12062317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19253069 - 19253024
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||    
T  19253069 ctaattataaaatgtctcaatttgatcccataaatattctgccgtt 19253024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 23886750 - 23886783
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataact 35  Q
    ||||| ||||||||||||||||||||||||||||    
T  23886750 taactttaaaatgtctcaatttggtcccataact 23886783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 31638374 - 31638422
Alignment:
Q  157 actaacatctaataaaatccattcatcttcctcttc--cctcatctctt 203  Q
    ||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  31638374 actaacacctaataaaatccattcatcttcttcttcctcctcatctctt 31638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32980519 - 32980446
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||| ||| |||||||||||||||| |||| | |||| |||||  || |||||||||| ||||||| ||||    
T  32980519 ctaactacaaagtgtctcaatttggtcctataaatcttctgccgtttactattttggtcatctccgttagtttt 32980446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51401418 - 51401373
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||    
T  51401418 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtt 51401373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2124078 - 2124146
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||| ||| ||||||||||||||| | || | |||||  || |||||||||| |||||||    
T  2124078 ctaactataaaatatcttaatttggtcccataaatcttatgccgtttactattttggtcatctccgtta 2124146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7822053 - 7821985
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||| |||||| ||||||||||||||||| ||  | || | |||||||||||||||||  |||||||||    
T  7822053 ctaattataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtactatccgtta 7821985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8372683 - 8372651
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  8372683 ctaactataaagtgtctcaatttggtcccataa 8372651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10987720 - 10987688
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  10987720 ctaactataaagtgtctcaatttggtcccataa 10987688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25583163 - 25583251
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaatgtct 88  Q
    |||||||| ||| |||||||||||||||||||| | |||| |||||  || |||||||| | || ||| ||||||||| | ||||||||    
T  25583163 ctaactattaaacgtctcaatttggtcccataagtcttctgccgtttactattttggtcctctctgttaatttttaaccttaaatgtct 25583251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29536763 - 29536795
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  29536763 ctaactataaagtgtctcaatttggtcccataa 29536795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43345369 - 43345413
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    |||||||||||||| ||||||||||||||||| | ||||| ||||    
T  43345369 taactataaaatgtttcaatttggtcccataaatcttctctcgtt 43345413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47767018 - 47766986
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  47767018 ctaactataaagtgtctcaatttggtcccataa 47766986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48252982 - 48253014
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  48252982 ctaactataaagtgtctcaatttggtcccataa 48253014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52292643 - 52292711
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||| ||||| ||  | || |  ||||||||||||||||| |||||||||    
T  52292643 ctaactataaagtgtctcaatttagtcccgtatgtcttttgtcgttacctcttttggtcttatccgtta 52292711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52293590 - 52293522
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||  ||  | ||||  ||||||||||||||||| | |||||||    
T  52293590 ctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctctccgtta 52293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 55443617 - 55443549
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || |  |||||||||||||||||  ||||||||    
T  55443617 ctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcccatccgtta 55443549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 23681 - 23775
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  23681 ctttactgtcaaccactaacatctaataaaatccattcatcttc---ttccctcatctcttccttcatttcttaatgatctttaacaacaacttcatc 23775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 23817 - 23891
Alignment:
Q  283 catattctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  23817 catattctttaatcactatacaatcataattgtcatcttcatctatcattatcaactcccttcttcctaaatatt 23891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23455 - 23497
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctccc 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  23455 ctaactataaaatgtctcaatttggtcccataactcttctccc 23497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 21387686 - 21387828
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| | || |||| ||||||||||||||  ||| |||| || ||    
T  21387686 ctaactataaaatgtctcaatttggtcccataaatcttctgccgttacctcttttggtcctgtctgttagtttttaacatcaaaactctaaggtgaaaca 21387785  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || |||| ||| ||||||||||||||||    
T  21387786 tatttaaaggtggttcaccataggccgtattaaattttttaat 21387828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 18693748 - 18693889
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||| | || |||| ||||||||||||||  ||| |||| ||||||    
T  18693748 taactataaaatgtctcaatctggtcccataaatcttctgtcgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccat 18693847  T
Q  101 atttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    || ||||| |||| || ||||  || ||||||||||||||||    
T  18693848 atataaaggtggttcaccatagaccgtattaaattttttaat 18693889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 7345457 - 7345350
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||| |||| |  ||||| ||||||||||| | |  | || ||||||||||||||  ||| |||| |||||    
T  7345457 ctaactataaagtgtctcaatttggtcccataaatattttgtcgttatctcttttggtcctctatgatagtttttaacatcaaaactctaaggtgaacca 7345358  T
Q  100 tatttaaa 107  Q
    ||||||||    
T  7345357 tatttaaa 7345350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 7426759 - 7426828
Alignment:
Q  69 atttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||||||||||||||| |||| || ||||||||||| ||||||| ||||  || ||||||||||||    
T  7426759 atttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaattttt 7426828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20991716 - 20991648
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||||||||||||||| ||  | || |  ||||||||||||||||| |||||||||    
T  20991716 ctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcctatccgtta 20991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22650695 - 22650627
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  22650695 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 22650627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 42510164 - 42510251
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtct 88  Q
    |||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||  | ||||||| |||||||| ||||||||||    
T  42510164 taactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtct 42510251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15510330 - 15510272
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    ||||||||||| ||||||||||||||||| ||  | |||| ||||||||||||||||||    
T  15510330 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtc 15510272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 19229898 - 19229848
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | |||||||||||||||||| |||||| ||||||||    
T  19229898 tttaatcactacaccaccatcattgtcatcttcatttatcatcatcaacac 19229848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15509244 - 15509313
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttat 70  Q
    ||||||||||| ||||||||||||||||| ||  | |||| ||||||||| |||||||| | ||||||||    
T  15509244 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgttat 15509313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15613554 - 15613627
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||| | ||||||| ||||    
T  15613554 ctaactataaagtgtctcaatttggtcccataaatcttcttccgtttactattttggtcctctccgttaatttt 15613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4567000 - 4567060
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcat 61  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  |||||||||||||||||||    
T  4567000 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcat 4567060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4568041 - 4567973
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| || |||||| |||||||||| |||||||    
T  4568041 ctaactataaagtgtctcaatttggtcccttatgtcttctgcctttacctattttggtcatctccgtta 4567973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32521735 - 32521803
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| |||||||||||| |||  ||  | || | ||||||||||||||||||||||||||||    
T  32521735 ctaactataaagtgtctcaatttgatccattatgtcttttgccgttacctcttttggtcatatccgtta 32521803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 1273139 - 1273170
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||||||||||||||||||||||||    
T  1273139 taactataaaatgtctcaatttggtcccataa 1273170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5384413 - 5384340
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||||||| ||||||||||||||||||||| | |||  |||||  || |||||||| | ||||||| ||||    
T  5384413 ctaactataaagtgtctcaatttggtcccataaatcttcgtccgtttactattttggtcctctccgttagtttt 5384340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 22819615 - 22819558
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    ||||||| || ||||||||||||||||||||||| |||| |||||  || ||||||||    
T  22819615 taactattaagtgtctcaatttggtcccataactcttctgccgtttactattttggtc 22819558  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18678025 - 18678057
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  18678025 ctaactataaagtgtctcaatttggtcccataa 18678057  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 51219033 - 51218891
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| |||||| |||  |||||| | ||||||| ||||||||||||||||||| | || |||||    
T  51219033 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgttagtttttaacatcaaatgtctaaagtgaacca 51218934  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  51218933 tatttaaagatggtccaccatatgccttattaaattttttaat 51218891  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 26056214 - 26056072
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttat-ttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||| | || |  ||||  || |||||||| | |||||||  ||||||||||||| |||| | || |||||    
T  26056214 ctaactataaagtgtctcaatttggtcccataaatcttttgtcgtttactattttggtcctctccgttagattttaacatcaaaagtctaaagtgaacca 26056115  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || |||| ||| ||||||||||||||||    
T  26056114 tatttaaaggtggttcaccataggccgtattaaattttttaat 26056072  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 44977270 - 44977408
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||| ||  ||||||| ||  | |||| |||||||||| ||||||||| || |||| ||||||||||||||||||| |||| |||||    
T  44977270 ctaactataaagtgtcttaaactggtcccttatgtcttctgccgttacctcatttggtcatctctgttagtttttaacatcaaatgtctaaggtgaacca 44977369  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||| ||||||| | ||  || ||||||||||||    
T  44977370 tatttaaaggtggtccaccgtaaaccttattaaattttt 44977408  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 51468729 - 51468674
Alignment:
Q  285 tattctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  51468729 tattatttaatcactacaccatcatcattgtcatcttcatctatcatcatcaacac 51468674  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 27689374 - 27689452
Alignment:
Q  43 cgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcat 120  Q
    ||||||||||||||||| | ||||||| ||||||||| ||||||||| | || |||||||||||||| |||||||||||    
T  27689374 cgttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtccatcat 27689452  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 50678416 - 50678550
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    ||||||||||||||||||||||||  || ||| | | || |||||||||||||||||| | || |||| ||||||||||||||  ||| |||| ||||||    
T  50678416 taactataaaatgtctcaatttgg--ccttaaatct-ctgccgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccat 50678512  T
Q  101 atttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||| |||| || ||||  || ||||||||||||    
T  50678513 atttaaaggtggttcaccatagaccgtattaaattttt 50678550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13641306 - 13641379
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||||| ||||||||||||    
T  13641306 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggtcatctccgttattttt 13641379  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48935177 - 48935109
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| |||||||||||||||||||| |||||||    
T  48935177 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 48935109  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 49141562 - 49141442
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    ||||||| || ||| |||| |||||||||||| | |||| |||||  |  |||| ||||| ||||||| ||||||||||||||||||| |||| ||||||    
T  49141562 taactattaagtgtttcaaattggtcccataatttttctgccgtttaccattttagtcatctccgttagtttttaacatcaaatgtctaaggtgaaccat 49141463  T
Q  101 atttaaagatggtccatcata 121  Q
    |||||||| || |||| ||||    
T  49141462 atttaaagttgttccaccata 49141442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 7111304 - 7111254
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  7111304 tttaatcactacaccaccatcattgtcatcttcatctatcatcatcaacac 7111254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 30551640 - 30551514
Alignment:
Q  17 tcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtcc 115  Q
    ||||||||||||| ||  | ||||  ||||||||||||||||||| ||||||| |||||| |||||||||||| | || ||||||||| |||| |||| |    
T  30551640 tcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgc 30551541  T
Q  116 atcatatgccctattaaattttttaat 142  Q
    | |||   || || |||||||||||||    
T  30551540 accatggaccttagtaaattttttaat 30551514  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 9633825 - 9633962
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||| ||||||||||||||   |||| | |||  |||||  |  ||||| || | ||||||| ||||||||||||||||||| |||| ||||||    
T  9633825 taactataaagtgtctcaatttggttatataaatcttcaaccgtttacagttttgatcctctccgttagtttttaacatcaaatgtctaaggtgaaccat 9633924  T
Q  101 atttaaagatggtccatcatatgccctattaaattttt 138  Q
     ||||||| ||||||| ||||  || ||||||||||||    
T  9633925 gtttaaaggtggtccaccatagaccttattaaattttt 9633962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 23082192 - 23082051
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| |||| || ||||||||||||| ||  | ||||  |||| |||||||||||| | ||||||| ||||||||| ||||| ||| | || ||||||    
T  23082192 taactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccat 23082093  T
Q  101 atttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||||||| ||||||| |||   || || |||||||||||||    
T  23082092 atttaaaggtggtccaccatggaccttaataaattttttaat 23082051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35683104 - 35683172
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| |||||||||||||||||| | |||||||    
T  35683104 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 35683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 14169669 - 14169767
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||||||||||||||||||||||||||||||| | || |  ||||  || |||||||| |||| |||| |||||||| | |||||||| |||| |||||    
T  14169669 taactataaaatgtctcaatttggtcccataaatcttttgtcgtttactattttggtcttatctgttagtttttaaccttaaatgtctaaggtgaacca 14169767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 17244476 - 17244526
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||||||    
T  17244476 tttaatcactacatcaccatcattgtcatcttcatctatcatcatcaacac 17244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 52759661 - 52759711
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | |||||||| |||||||||||||||| ||||||||    
T  52759661 tttaatcactacaccaccatcattgacatcttcatctatcatcatcaacac 52759711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 51218830 - 51218769
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    |||| |||| ||| ||| ||| ||||||||||| |||||||||| |||||||||||||||||    
T  51218830 ctttcctgtgaaccactcacacctaataaaatcgattcatcttcttcttccctcatctcttc 51218769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 14764624 - 14764668
Alignment:
Q  317 atcttcatctatcattatcaacactcttcttcctaaatattcttc 361  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||    
T  14764624 atcttcatctatcatcatcaacatccttcttcctaaatattcttc 14764668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 36511397 - 36511325
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||| ||||||||||||||||||||| | ||||  ||||  || |||||||||| ||||||| ||||    
T  36511397 taactataaagtgtctcaatttggtcccataaatcttctgtcgtttactattttggtcatctccgttagtttt 36511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 51218704 - 51218652
Alignment:
Q  288 tctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    ||||||||||  |||||| ||||||||||||||||||||||||  ||||||||    
T  51218704 tctttaatcatcacacaaccatcattgtcatcttcatctatcagcatcaacac 51218652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 2238044 - 2237977
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  2238044 taactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 2237977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 3979379 - 3979312
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||| | |||||||    
T  3979379 taactataaagtgtctcaatttggtcccataattcttctgccgtttactattttggtcctctccgtta 3979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 22766886 - 22766771
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| |||| || |||||||| |||| ||  | ||||  |||| |||||||||||| | ||||||| ||||||||| ||||| ||| | || ||||||    
T  22766886 taactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccat 22766787  T
Q  101 atttaaagatggtcca 116  Q
    |||||||| |||||||    
T  22766786 atttaaaggtggtcca 22766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 37624636 - 37624529
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| |||| || ||||||||||||  ||  | ||||  |||||| |||||||||| | ||||||| ||||||||||||||||||| | || ||||||    
T  37624636 taactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccat 37624537  T
Q  101 atttaaag 108  Q
    ||| ||||    
T  37624536 attaaaag 37624529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 45570368 - 45570425
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    ||||||| ||||||||||| |||||| ||||||| |||| || |||||| ||||||||    
T  45570368 taactatcaaatgtctcaacttggtctcataactcttctgccattacctattttggtc 45570425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1061519 - 1061451
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||| ||||||||| | ||  | || | |||||||||||||||||| |||||||||    
T  1061519 ctaactataaagtgtcttaatttggtcacttatgtcttttgccgttacctcttttggtcctatccgtta 1061451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2236862 - 2236930
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  |||||||||||||| || | |||||||    
T  2236862 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttgatcctctccgtta 2236930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2971748 - 2971780
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  2971748 ctaactataaagtgtctcaatttggtcccataa 2971780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13930742 - 13930710
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  13930742 ctaactataaagtgtctcaatttggtcccataa 13930710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14071270 - 14071238
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  14071270 ctaactataaagtgtctcaatttggtcccataa 14071238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14390307 - 14390339
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  14390307 ctaactataaaatgtctcaatttggttccataa 14390339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 21277043 - 21277183
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| | ||||||||||||||||||| | |||| |||||  || ||||| || | ||| ||| ||||| || | |||||||| |||| |||||    
T  21277043 ctaactataaagtatctcaatttggtcccataaatcttctgccgtttactattttgatcctctccattagtttttgaccttaaatgtctaaggtgaacca 21277142  T
Q  100 tatttaaagatggtccatcatatgccctattaaatttttta 140  Q
      |||| || ||||||| ||||  || |||||||| |||||    
T  21277143 actttataggtggtccaccatagaccttattaaatctttta 21277183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25786017 - 25786049
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  25786017 ctaactataaagtgtctcaatttggtcccataa 25786049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34532769 - 34532713
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttgg 57  Q
    ||||||||||| ||||||||||||||||| ||  | || | ||||||||||||||||    
T  34532769 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttgg 34532713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35684269 - 35684202
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  35684269 ctaactataaa-tgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 35684202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 40811245 - 40811317
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||| ||||||||||||||| |||||||||| || | |||||   | |||||||||| ||||||| ||||    
T  40811245 taactattaaatgtctcaatttgatcccataactcttttgccgtttattattttggtcatctccgttagtttt 40811317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47411515 - 47411483
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  47411515 ctaactataaagtgtctcaatttggtcccataa 47411483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 51218785 - 51218745
Alignment:
Q  200 tcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  51218785 tcttccctcatctcttcgtgatcttcaacaacaacttcatc 51218745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 21670113 - 21670255
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| |||||||||||||||||| | ||||||| ||||||||||||||| ||| |||| |||||    
T  21670113 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggtcttctccgttagtttttaacatcaaatatctaaggtgaacca 21670212  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||| |||  ||||||| |||||||| |||||| |||||||||    
T  21670213 tattaaaaagtggtccaccatatgccttattaatttttttaat 21670255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 44103363 - 44103224
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| ||||||| |||||| | ||  | |||| ||||| |||||||||||| | ||||||| ||||||||||||||||||| |||| |||||    
T  44103363 ctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaacca 44103264  T
Q  100 tatttaaagatggtccatcatatgccctattaaatttttt 139  Q
    | ||||||| ||||||| |||||||| |||||| ||||||    
T  44103263 tgtttaaaggtggtccaccatatgccttattaattttttt 44103224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 21961908 - 21962014
Alignment:
Q  37 ttctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaatt 135  Q
    |||| |||||| ||||||||||| | ||||||| ||||||||||||||||||| |||| |||||| ||||||| ||||||| |||||||| || ||||||    
T  21961908 ttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaatt 21962007  T
Q  136 ttttaat 142  Q
    |||||||    
T  21962008 ttttaat 21962014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 39325572 - 39325505
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  39325572 tttaatcaccacacaaccatcattgtcatcttcatctatcatcatcaacacccttcttcctaaatatt 39325505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 10052153 - 10052291
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||| |||||| |||||||| |||||||| ||  |  ||| |||||||||||||||||||| ||| ||| |||||||||| |||||||| || | |||||    
T  10052153 ctaattataaagtgtctcaaattggtcccttatgtcatctgccgttacctcttttggtcatctcctttagtttttaacattaaatgtctaagatgaacca 10052252  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||| ||||||| ||||  || ||||||||||||    
T  10052253 tatttaaaggtggtccaccataaaccttattaaattttt 10052291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 13513671 - 13513768
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    ||||||||| ||| ||| ||| | ||||||||  |||||||||| |||||||||||||||| | |||| |||| ||||||||||||||||||||||||    
T  13513671 ctttactgtgaaccactcacaccaaataaaattgattcatcttcttcttccctcatctctttcctcatctctttatgatcttcaacaacaacttcatc 13513768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 13603204 - 13603301
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    ||||||||| ||| ||| ||| | ||||||||  |||||||||| |||||||||||||||| | |||| |||| ||||||||||||||||||||||||    
T  13603204 ctttactgtgaaccactcacaccaaataaaattgattcatcttcttcttccctcatctctttcctcatctctttatgatcttcaacaacaacttcatc 13603301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13513469 - 13513611
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttat-ttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| | |||||||||||||||| | |||||||  |||||||||||||||| | || | |||||    
T  13513469 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatgaacca 13513568  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||  ||||||| ||||| || |||||| |||||||||    
T  13513569 tatttaaaagtggtccaccatataccttattaatttttttaat 13513611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13603002 - 13603144
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttat-ttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| | |||||||||||||||| | |||||||  |||||||||||||||| | || | |||||    
T  13603002 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatgaacca 13603101  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||  ||||||| ||||| || |||||| |||||||||    
T  13603102 tatttaaaagtggtccaccatataccttattaatttttttaat 13603144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 39325865 - 39325759
Alignment:
Q  37 ttctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaatt 135  Q
    |||| |||||||||||||| ||||| || | || ||||||||||||||||||| |||| ||| || ||||||| ||||| |||||||||| || ||||||    
T  39325865 ttcttccgttacctcttttagtcatctctgctagtttttaacatcaaatgtctaaggtgaactatgtttaaaggtggtctatcatatgccttactaaatt 39325766  T
Q  136 ttttaat 142  Q
    |||||||    
T  39325765 ttttaat 39325759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43386769 - 43386716
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttt 54  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  43386769 ctaactataaaatgtctcaatttggtcccataactcttctccctttacctcttt 43386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39546744 - 39546628
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||||| |||| ||||||||||||||||||||| |||| | |||||  |  |||||||||| ||||||| ||||||||||||||||| | || | |||||    
T  39546744 ctaactttaaagtgtctcaatttggtcccataaatattatgccgtttaccgttttggtcatctccgttagtttttaacatcaaatgtttaagatgaacca 39546645  T
Q  100 tatttaaagatggtcca 116  Q
    | ||||||| |||||||    
T  39546644 tgtttaaaggtggtcca 39546628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 36756114 - 36756251
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||| ||| ||||| ||||| ||||| | || |  ||||  || |||||||||| ||||||| ||||||||||||||| ||| |||| || |||    
T  36756114 taactataaagtgtttcaatctggtcacataaatcttatgtcgtttactattttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcat 36756213  T
Q  101 atttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||| |||| || |||| ||| ||||||||||||    
T  36756214 atttaaaggtggttcaccataagccttattaaattttt 36756251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 37276309 - 37276168
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||| ||||||||||||||||||||| | || | |||||   | | |||||| | || |||| |||||||||||||| |||| |||| ||||||    
T  37276309 taactataaagtgtctcaatttggtcccataaatcttttgccgtttattatattggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccat 37276210  T
Q  101 atttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||||||| |||| ||  |||  || ||||||||||||||||    
T  37276209 atttaaaggtggttcactatagaccatattaaattttttaat 37276168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 13363602 - 13363503
Alignment:
Q  44 gttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||||||||||||||| | ||||||| ||||||||| ||||||||| | || |||||||||||||| |||| || |||   || || |||||||||||||    
T  13363602 gttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaat 13363503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 117097 - 117218
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||| |||||||||| |||||||| |||||||| | ||||  ||||   | |||||||| | ||||||| ||||||||||||||||||| |||| |  ||    
T  117097 ctaattataaaatgtttcaatttgatcccataaatcttctgtcgtttattgttttggtcctctccgttagtttttaacatcaaatgtctaaggtgagtca 117196  T
Q  100 tatttaaagatggtccatcata 121  Q
    | ||||||| ||||||| ||||    
T  117197 tgtttaaaggtggtccaccata 117218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 7486127 - 7486264
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||| ||  ||||||||||||||||| | || | | |||  || |||||||| | ||||||| ||||||||||||||||||| | || ||||||    
T  7486127 taactataaagtgcttcaatttggtcccataaatcttttgctgtttactattttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccat 7486226  T
Q  101 atttaaagatggtccatcatatgccctattaaattttt 138  Q
     ||||||  | ||||| ||||  || ||||||||||||    
T  7486227 gtttaaatgttgtccaccatagaccttattaaattttt 7486264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 44103159 - 44103098
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||| ||| ||| ||| ||| |||||||||||||||||||||| ||| |||||||||||||    
T  44103159 ctttattgtgaaccactcacacctaataaaatccattcatcttcttctcccctcatctcttc 44103098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 13367116 - 13366996
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||||||| ||| | ||||||||||||||| | |||| |||||  || |||||||| | ||||||| |||||||| | |||||||| |||| |||||     
T  13367116 taactataaagtgttttaatttggtcccataaatcttctgccgtttactattttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaa 13367017  T
Q  101 atttaaagatggtccatcata 121  Q
     |||| || ||||||| ||||    
T  13367016 ctttataggtggtccaccata 13366996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 21670360 - 21670400
Alignment:
Q  200 tcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  21670360 tcttccctcatctcttcatgatcttcaacaacaacttcatc 21670400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 24069512 - 24069468
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||    
T  24069512 taactataaagtgtctcaatttggtcccataactcttctgccgtt 24069468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 44103027 - 44102975
Alignment:
Q  288 tctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    ||||||||||  ||| || ||||||||||||||||||||||||| ||||||||    
T  44103027 tctttaatcatcacataaccatcattgtcatcttcatctatcatcatcaacac 44102975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 20308655 - 20308794
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaatgtctgaggttaaccat 100  Q
    ||||||| || ||||||||||||||| ||||||| ||||  ||||  || |||||||||| ||| || ||||||||| | |||||||| |||| |||||     
T  20308655 taactattaagtgtctcaatttggtctcataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaa 20308754  T
Q  101 atttaaagatggtccatcatatgccctattaaatttttta 140  Q
     |||| |||| ||||  ||||  || |||||||| |||||    
T  20308755 ctttatagatagtccgccatagaccttattaaatctttta 20308794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 21095288 - 21095427
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaatgtctgaggttaaccat 100  Q
    ||||||| || ||||||||||||||| ||||||| ||||  ||||  || |||||||||| ||| || ||||||||| | |||||||| |||| |||||     
T  21095288 taactattaagtgtctcaatttggtctcataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaa 21095387  T
Q  101 atttaaagatggtccatcatatgccctattaaatttttta 140  Q
     |||| |||| ||||  ||||  || |||||||| |||||    
T  21095388 ctttatagatagtccgccatagaccttattaaatctttta 21095427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 21962074 - 21962117
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttc 186  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||    
T  21962074 ctttactgtgaaccactaacatctgataaaatccattcatcttc 21962117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29739710 - 29739643
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt 68  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  |  |||||||||| ||||||    
T  29739710 ctaactataaagtgtctcaatttggtcccataaattttcttccgtttaccattttggtcatgtccgtt 29739643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 35943965 - 35944056
Alignment:
Q  9 aaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||||||||||||||||| | || | | |||  || |||||||||| ||||||| |||||||| | |||||||| |||| |||||    
T  35943965 aaaatgtctcaatttggtcccataaatcttatgcagtttactattttggtcatctccgttagtttttaactttaaatgtctaaggtgaacca 35944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 45384290 - 45384357
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||||||||| |||| ||  | || | | ||||||| ||||||||||||||||||    
T  45384290 taactataaaatgtctcaatttgatcccttatgttttttgctgttacctattttggtcatatccgtta 45384357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43277988 - 43277922
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgt 67  Q
    ||||||||||||||||||||||||||||| ||| | || | |||||  || |||||||||| |||||    
T  43277988 ctaactataaaatgtctcaatttggtcccgtaaatcttatgccgtttactattttggtcatgtccgt 43277922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3237466 - 3237511
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    |||||| |||| ||||||||||||||||||||| |||||| |||||    
T  3237466 ctaactttaaactgtctcaatttggtcccataaatattctgccgtt 3237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13514932 - 13514859
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| | |||||||||||||||||| ||||||| ||||    
T  13514932 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagtttt 13514859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13604465 - 13604392
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||| |||| ||||||| |||||||| ||  | |||| | |||||||||||||||||| ||||||| ||||    
T  13604465 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagtttt 13604392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37274936 - 37275009
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||||||| |||||||||||| |||||||| | |||| |||||  || |||||||| | ||||||| ||||    
T  37274936 ctaactataaagtgtctcaatttgttcccataaatcttctgccgtttactattttggtcctctccgttagtttt 37275009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24068379 - 24068411
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  24068379 ctaactataaagtgtctcaatttggtcccataa 24068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36070227 - 36070367
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| |||||||||||| |||||||| | |||| |||||  || |||||||| |  |||||| | ||| || | |||||||| |||| |||||    
T  36070227 ctaactataaagtgtctcaatttgatcccataaatcttctgccgtttactattttggtcctccccgttagtctttgaccttaaatgtctaaggtgaacca 36070326  T
Q  100 tatttaaagatggtccatcatatgccctattaaatttttta 140  Q
      |||| || ||||||| ||||  || |||||||| |||||    
T  36070327 actttataggtggtccaccatagaccttattaaatatttta 36070367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37323397 - 37323429
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37323397 ctaactataaaatgtctcaatttgatcccataa 37323429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37472452 - 37472484
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  37472452 ctaactataaagtgtctcaatttggtcccataa 37472484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38591074 - 38591042
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  38591074 ctaactataaagtgtctcaatttggtcccataa 38591042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41867983 - 41867951
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  41867983 ctaactataaagtgtctcaatttggtcccataa 41867951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 14714744 - 14714840
Alignment:
Q  144 tttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    |||||||| ||| ||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||   ||||||| |||||||||||||||||||    
T  14714744 tttactgtgaaccactaacacctaataaaattcattcatcttcttcttccctcatctcttccctcatccgttcatgaacttcaacaacaacttcatc 14714840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 14714577 - 14714683
Alignment:
Q  37 ttctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaatt 135  Q
    |||| |||||||| ||||||||| | ||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||| |||| ||| |||||| ||    
T  14714577 ttcttccgttaccacttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaattt 14714676  T
Q  136 ttttaat 142  Q
    |||||||    
T  14714677 ttttaat 14714683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 26205063 - 26205200
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| |||| ||||||| |||||||| ||  | |||| |||||||||| ||||||| | ||||||| ||||||||||||||||||| |||| ||||||    
T  26205063 taactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccat 26205162  T
Q  101 atttaaagatggtccatcatatgccctattaaattttt 138  Q
    | |||||  ||||||| |||||||| |||||| |||||    
T  26205163 acttaaaagtggtccaccatatgccttattaatttttt 26205200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 12852935 - 12853073
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||| | ||||  ||||  || |||||||||| |||||||  |||||||||||||  ||| |||| |||||    
T  12852935 ctaactataaagtgtctcaatttggtcccataaatcttctatcgtttactattttggtcatctccgttagattttaacatcaaaaatctaaggtgaacca 12853034  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||| |||| || ||||  || ||||||||||||    
T  12853035 tatttaaaggtggttcaccatagaccgtattaaattttt 12853073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 4512156 - 4512297
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| |||| ||||||| |||||||| |   | |||| |||||||||||||||||| | ||| ||| ||||||||||||||| ||| |||| ||||||    
T  4512156 taactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctccattagtttttaacatcaaatatctaaggtgaaccat 4512255  T
Q  101 atttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||| |||  ||||||| |||||||| |||||| |||||||||    
T  4512256 attaaaaagtggtccaccatatgccttattaatttttttaat 4512297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23177723 - 23177836
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  |  |||||||| | ||||||| |||||||||| |||  ||| || | |||||    
T  23177723 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaacca 23177822  T
Q  100 tatttaaagatggt 113  Q
    ||||||||||||||    
T  23177823 tatttaaagatggt 23177836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23588980 - 23589093
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  |  |||||||| | ||||||| |||||||||| |||  ||| || | |||||    
T  23588980 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaacca 23589079  T
Q  100 tatttaaagatggt 113  Q
    ||||||||||||||    
T  23589080 tatttaaagatggt 23589093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 29424679 - 29424541
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttatttt-taacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||| ||||||||||||| | | |||||| |||||   | |||||||| | || |||| ||  ||||||||||||||| || | |||||    
T  29424679 ctaactataaagtgtttcaatttggtcccttgaatattctgccgtttattgttttggtcctctctgttagttactaacatcaaatgtctaagatgaacca 29424580  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    | ||||||| ||||||||||||  || ||||||||||||    
T  29424579 tgtttaaaggtggtccatcatagaccttattaaattttt 29424541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2305589 - 2305657
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| |||||||||||||||||| | |||||||    
T  2305589 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 2305657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 14714912 - 14714972
Alignment:
Q  144 tttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    |||||||| ||| ||||||| |||||||||| ||||||||||| |||||||||||| ||||    
T  14714912 tttactgtgaaccactaacacctaataaaattcattcatcttcttcttccctcatcccttc 14714972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 7983693 - 7983624
Alignment:
Q  69 atttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||||||||||||||| |||| |||||| ||||||| ||||||| ||||   | ||||||||||||    
T  7983693 atttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaattttt 7983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 14715037 - 14715094
Alignment:
Q  283 catattctttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||| ||||||||||| | |||| ||||||||||||||| ||||||||| ||||||||    
T  14715037 catactctttaatcaccagacaaccatcattgtcatctttatctatcatcatcaacac 14715094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 15850725 - 15850668
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    |||||||||||||| ||||||||||| ||||||| |||| | ||||||| ||||||||    
T  15850725 taactataaaatgtttcaatttggtctcataactcttctgctgttacctattttggtc 15850668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3665273 - 3665333
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcat 61  Q
    ||||||||||||||| ||||||||||||| ||  | |||| ||||||||||||||| ||||    
T  3665273 ctaactataaaatgtttcaatttggtcccttatgtcttctgccgttacctcttttgatcat 3665333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 45047447 - 45047507
Alignment:
Q  57 gtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtcca 116  Q
    ||||| ||||||| ||||||| ||||||||||| |||| |||||||||||||| |||||||    
T  45047447 gtcatttccgttaatttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtcca 45047507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 3532312 - 3532367
Alignment:
Q  69 atttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgc 124  Q
    ||||||||||| |||||| | |||| |||||||||||||| ||||||| |||||||    
T  3532312 atttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccatatgc 3532367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 4628936 - 4628999
Alignment:
Q  6 tataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||| | |||||||||| |||||||  | || | ||||||||||||||||||||||||||||    
T  4628936 tataaagtatctcaatttgatcccatatgtcttttgccgttacctcttttggtcatatccgtta 4628999  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 8537062 - 8537149
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtct 88  Q
    |||||| |||||||||||| |||||||| ||  ||||||  ||||| || |||||||||| ||||||| |||||||| | ||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgttagtttttaaccttaaatgtct 8537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35799561 - 35799615
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccg-ttacctcttt 54  Q
    ||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||||    
T  35799561 ctaactataaagtgtctcaatttggtctcataacttttcttccgtttacctcttt 35799615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 4512357 - 4512418
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||||||| ||| | | ||| ||||||||||| |||||||||| ||||||||| |||||||    
T  4512357 ctttactgtgaaccattcacacctaataaaatcaattcatcttcttcttccctcgtctcttc 4512418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 21010492 - 21010427
Alignment:
Q  73 ttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||||||||||| | || |||| ||||||||| ||||| ||||||  || ||||||||||||    
T  21010492 ttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaattttt 21010427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2306728 - 2306660
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||| |||| ||||||||||||||||  ||  | |||| |||||||||||||||||| | |||||||    
T  2306728 ctaactgtaaagtgtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgtta 2306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2581852 - 2581884
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  2581852 ctaactataaagtgtctcaatttggtcccataa 2581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 3528262 - 3528190
Alignment:
Q  70 tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||| | |||| |||| |||| |||||||||||||| |||| || ||||  || ||||||||||||||||    
T  3528262 tttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 3528190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 6708968 - 6708904
Alignment:
Q  78 atcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||||| ||||||||| |||||||||||||| |||| || ||||  || ||||||||||| ||||    
T  6708968 atcaaaagtctgaggtgaaccatatttaaaggtggttcaccataaaccgtattaaattttctaat 6708904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 7037016 - 7037092
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccg-ttatttttaac 77  Q
    |||||||||| ||| ||||||||||||||||| | |||| |||||  |  |||||||||| |||| |||||||||||    
T  7037016 taactataaagtgtttcaatttggtcccataagtcttctgccgtttaccattttggtcatttccgtttatttttaac 7037092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 7038398 - 7038366
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataac 34  Q
    |||||||||| ||||||||||||||||||||||    
T  7038398 taactataaagtgtctcaatttggtcccataac 7038366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12958465 - 12958497
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  12958465 ctaactataaagtgtctcaatttggtcccataa 12958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41313334 - 41313266
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||| |||||| |||| ||  | || | |||||||||||||||||| |||||||||    
T  41313334 ctaactataaagtgtctgaatttgatcccttatgtcttttgccgttacctcttttggtcttatccgtta 41313266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42027242 - 42027274
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  42027242 ctaactacaaaatgtctcaatttggtcccataa 42027274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 207829 - 207723
Alignment:
Q  37 ttctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaatt 135  Q
    |||| |||||| ||||||||||| | ||||||| ||||||||||||||||||| |||| |||||| ||||||| ||||||| |||||||| || ||||||    
T  207829 ttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaatt 207730  T
Q  136 ttttaat 142  Q
    |||||||    
T  207729 ttttaat 207723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 207663 - 207620
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttc 186  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||    
T  207663 ctttactgtgaaccactaacatctgataaaatccattcatcttc 207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 39968 - 39826
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    |||| |||||| ||||||||||||||||||||| | ||| | | ||||||||||||||| | || |||| |||||||||||||| |||| |||| || ||    
T  39968 ctaagtataaagtgtctcaatttggtcccataaatcttcccacattacctcttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatca 39869  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    ||||||||| |||| || |||   || ||||||||||||||||    
T  39868 tatttaaaggtggttcaccatggaccgtattaaattttttaat 39826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22176 - 22249
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||||||||||||||||| || ||||| | ||||  ||||  || |||||||||| ||||||| ||||    
T  22176 ctaactataaaatgtctcaatttgttcacataaatcttctgtcgtttactattttggtcatctccgttaatttt 22249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 24495117 - 24494976
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaaccat 100  Q
    |||||| ||||  |||||| |||||||| ||  | |||| | |||||||| ||||||| | ||||||| ||||||||||||||||||| | || ||||||    
T  24495117 taactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccat 24495018  T
Q  101 atttaaagatggtccatcatatgccctattaaattttttaat 142  Q
    |||||||  ||||||| |||||||| |||||| |||||||||    
T  24495017 atttaaaagtggtccaccatatgccttattaatttttttaat 24494976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 35314981 - 35314914
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacactcttcttcctaaatatt 357  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||||||  |||||||||||||||    
T  35314981 tttaatcaccacacaaccatcattgtcatcttcatctataatcatcaacaccattcttcctaaatatt 35314914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 9392626 - 9392576
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  9392626 tttaatcactacaccatcatcattgtcatcttcatctatcatcatcaacac 9392576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38406067 - 38406204
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||  |||| |||||| | ||||  ||||  || |||||||| | ||||||| ||||||||||||||||||| |||| |||||    
T  38406067 ctaactataaagtgtctcaaactggttccataaatcttctgacgtttactgttttggtcctttccgttaatttttaacatcaaatgtctaaggtgaacca 38406166  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||| | ||||| ||||  || ||||||||||||    
T  38406167 tatttaaaggtagtcca-catagaccttattaaattttt 38406204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4857250 - 4857343
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggt 93  Q
    |||||||||||||||||| ||||||||||| || | |||| |||||  || |||| ||| | ||||||| ||||||||||||||||||| ||||    
T  4857250 ctaactataaaatgtctcgatttggtcccacaaatcttctgccgtttactgttttagtcctctccgttagtttttaacatcaaatgtctaaggt 4857343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36673903 - 36673845
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtc 59  Q
    ||||||||||||||||||||||||||||| ||  | ||||  |||||||||||||||||    
T  36673903 ctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtc 36673845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 37236085 - 37236135
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||||||    
T  37236085 tttaatcactacatcaccatcattgtcatcttcatctatcatcatcaacac 37236135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 24494914 - 24494853
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatctcttc 204  Q
    ||||||||| ||| ||| ||| ||||||||||  |||||||||| |||||||||||||||||    
T  24494914 ctttactgtgaaccactcacacctaataaaattgattcatcttcttcttccctcatctcttc 24494853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4858411 - 4858379
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||||||||||||||||||||||||    
T  4858411 ctaactataaaatgtctcaatttggtcccataa 4858379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 14109068 - 14109000
Alignment:
Q  70 tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||||||||||||| |||| |||||| ||||||| ||||||| ||||  || ||||||| ||||    
T  14109068 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaatttt 14109000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 14419025 - 14418957
Alignment:
Q  70 tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    ||||||||||||||||||| |||| |||||| ||||||| ||||||| ||||  || ||||||| ||||    
T  14419025 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaatttt 14418957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 24494869 - 24494829
Alignment:
Q  200 tcttccttcatttcttcatgatcttcaacaacaacttcatc 240  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  24494869 tcttccctcatctcttcatgatcttcaacaacaacttcatc 24494829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30224043 - 30223975
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | |||| ||||||| |||||||||| | |||||||    
T  30224043 ctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgtta 30223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34558368 - 34558300
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| | ||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  34558368 ctaactataaagtatctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 34558300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 35315102 - 35315046
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatc 199  Q
    ||||||||| ||||||||||| ||||   ||||||||||||||| ||||||||||||    
T  35315102 ctttactgtgaactactaacacctaagttaatccattcatcttcttcttccctcatc 35315046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41126288 - 41126356
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  41126288 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 41126356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24873664 - 24873597
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt 68  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  |  |||||||||| ||||||    
T  24873664 ctaactataaagtgtctcaatttggtcccataagtcttctgccgtttaccattttggtcatttccgtt 24873597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 33341348 - 33341415
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||||||||| ||||||||||||||||  ||  | || | |||||||||||||||||| |||||||||    
T  33341348 taactataaattgtctcaatttggtccattatgtcttttgccgttacctcttttggtcctatccgtta 33341415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 36703010 - 36702947
Alignment:
Q  8 taaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttatt 71  Q
    |||| ||||||||||||||||||||| |||||| |||||  || |||||||| | |||||||||    
T  36703010 taaactgtctcaatttggtcccataaatattctgccgtttactattttggtcctttccgttatt 36702947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 48755614 - 48755547
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||||||||| |||| ||  | || | ||||||||| |||||||| |||||||||    
T  48755614 taactataaaatgtctcaatttgatcccttatgttttttgccgttacctattttggtcctatccgtta 48755547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 13599090 - 13599040
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||| ||||||| | ||||||||||| ||||||||||||| ||||||||    
T  13599090 tttaattactacaccaccatcattgtcaacttcatctatcatcatcaacac 13599040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 43114908 - 43114858
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||||||||||| | ||||||| ||||||| ||||||||| ||||||||    
T  43114908 tttaatcactacaccaccatcattatcatctttatctatcatcatcaacac 43114858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 46458779 - 46458681
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccg-ttatttttaacatcaaatgtctgaggttaacca 99  Q
    |||||||||| ||||||||||||||||||||| | |||| |||||  |  |||||||| | |||| || |||||||| | |||||||| |||| |||||    
T  46458779 taactataaagtgtctcaatttggtcccataaatcttcttccgtttaccattttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaacca 46458681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 4167569 - 4167638
Alignment:
Q  69 atttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaattttt 138  Q
    |||||||||||||||| ||| |||| |||||| ||||||| ||||||| ||||   | ||||||||||||    
T  4167569 atttttaacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaattttt 4167638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25153707 - 25153752
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||    
T  25153707 ctaactataaagtgtctcaatttggtcccataaatcttcttccgtt 25153752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41516411 - 41516366
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||||||||| ||||| ||||||||||||||| |||||| |||||    
T  41516411 ctaactataaagtgtcttaatttggtcccataagtattcttccgtt 41516366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2903093 - 2903161
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || | || |||||| |||||||| |||||||||    
T  2903093 ctaactataaagtgtctcaatttggtcccttatgtctttttccattaccttttttggtcctatccgtta 2903161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17288287 - 17288255
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  17288287 ctaactataaagtgtctcaatttggtcccataa 17288255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18801264 - 18801296
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  18801264 ctaactataaagtgtctcaatttggtcccataa 18801296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19279679 - 19279647
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  19279679 ctaactataaagtgtctcaatttggtcccataa 19279647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22061862 - 22061830
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    |||||||||||| ||||||||||||||||||||    
T  22061862 ctaactataaaacgtctcaatttggtcccataa 22061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22746387 - 22746355
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  22746387 ctaactataaagtgtctcaatttggtcccataa 22746355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33459610 - 33459578
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  33459610 ctaactataaagtgtctcaatttggtcccataa 33459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35127859 - 35127891
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  35127859 ctaactataaaatgtctcaattttgtcccataa 35127891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35480256 - 35480324
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||| ||||| ||  | || | |||||||||||||||||| |||| ||||    
T  35480256 ctaactataaagtgtctcaatttagtcccttatgtcttttgccgttacctcttttggtcctatcggtta 35480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 36702827 - 36702871
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgtt 46  Q
    ||||| |||| ||||||||||||||||||||| |||||| |||||    
T  36702827 taactttaaactgtctcaatttggtcccataaatattctgccgtt 36702871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43007716 - 43007684
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  43007716 ctaactataaagtgtctcaatttggtcccataa 43007684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 695 - 582
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||| ||||||||| | |||| |||||  |  |||||||||| ||||||| |||||||||| |||  ||| |||| |||||    
T  695 ctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaacca 596  T
Q  100 tatttaaagatggt 113  Q
    ||||||||||||||    
T  595 tatttaaagatggt 582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 579 - 692
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||| ||||||||| | |||| |||||  |  |||||||||| ||||||| |||||||||| |||  ||| |||| |||||    
T  579 ctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaacca 678  T
Q  100 tatttaaagatggt 113  Q
    ||||||||||||||    
T  679 tatttaaagatggt 692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9545 - 9432
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| ||||||||||| ||||||||| | |||| |||||  |  |||||||||| ||||||| |||||||||| |||  ||| |||| |||||    
T  9545 ctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaacca 9446  T
Q  100 tatttaaagatggt 113  Q
    ||||||||||||||    
T  9445 tatttaaagatggt 9432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 41027 - 41096
Alignment:
Q  70 tttttaacatcaaatgtctgaggttaaccatatttaaagatggtccatcatatgccctattaaatttttt 139  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||| || ||||||||||    
T  41027 tttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaatttttt 41096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 41159 - 41215
Alignment:
Q  143 ctttactgtcaactactaacatctaataaaatccattcatcttcctcttccctcatc 199  Q
    ||||||||| ||| ||||||| ||||   ||||||||||||||| ||||||||||||    
T  41159 ctttactgtgaaccactaacacctaagttaatccattcatcttcttcttccctcatc 41215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22299970 - 22299897
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||  || |||||||||| ||||||||||||    
T  22299970 ctaactataaagtgtctcaatttggtcccataaatcttctgccgtttactattttggtcatctccgttattttt 22299897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 27438840 - 27438912
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||  ||||||||||||| ||||||| ||||    
T  27438840 taactataaagtgtctcaatttgatcccataaatattctgccgtttactcttttggtcatctccgttaatttt 27438912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 18139554 - 18139416
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta-tttttaacatcaaatgtctgaggttaacca 99  Q
    ||||||||||| |||||||| |||||||| ||  | |||| |||||   | |||||||| | ||| ||| ||||||||||||||||||| |||| |||||    
T  18139554 ctaactataaagtgtctcaaattggtcccttatatcttctgccgtttattgttttggtcctctccattagtttttaacatcaaatgtctaaggtgaacca 18139455  T
Q  100 tatttaaagatggtccatcatatgccctattaaattttt 138  Q
    | |||||||||| |||| ||||  |  ||||||||||||    
T  18139454 tgtttaaagatgatccaccatagacattattaaattttt 18139416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8447270 - 8447338
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  8447270 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8456074 - 8456142
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| ||||||||||||||||| ||  | || | |||||||||||||||||| |||||||||    
T  8456074 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26584104 - 26584036
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||| |||||||||||||| || ||  | || | |||||||||||||||||| |||||||||    
T  26584104 ctaactataaagtgtctcaatttggttccttatgtcttttgccgttacctcttttggtcgtatccgtta 26584036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 27440241 - 27440149
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaatgtctgaggt 93  Q
    ||||| |||| ||||||||||||||||||||| | |||| |||||  || |||||||| | |||||| ||||||||| | |||||||| ||||    
T  27440241 taactttaaattgtctcaatttggtcccataaatcttcttccgtttactattttggtcctctccgttaatttttaactttaaatgtctaaggt 27440149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 11801171 - 11801121
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcattatcaacac 340  Q
    |||||| ||||||| | |||||||||||||||||||||| || ||||||||    
T  11801171 tttaattactacaccaccatcattgtcatcttcatctataatcatcaacac 11801121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 13507168 - 13507122
Alignment:
Q  70 tttttaacatcaaatgtctgaggttaaccatatttaaagatggtcca 116  Q
    ||||||||||||||||| | |||| |||||||||||||| |||||||    
T  13507168 tttttaacatcaaatgtttaaggtgaaccatatttaaaggtggtcca 13507122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 32348101 - 32348142
Alignment:
Q  290 tttaatcactacacaatcatcattgtcatcttcatctatcat 331  Q
    |||||||||||||| | |||||||||||||||||| ||||||    
T  32348101 tttaatcactacaccaccatcattgtcatcttcatttatcat 32348142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8412383 - 8412351
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  8412383 ctaactataaagtgtctcaatttggtcccataa 8412351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9927655 - 9927687
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  9927655 ctaactataaagtgtctcaatttggtcccataa 9927687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 48522 - 48450
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgttattttt 74  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||  ||||||||||||| ||||||| ||||    
T  48522 taactataaagtgtctcaatttgatcccataaatattctgccgtttactcttttggtcatctccgttaatttt 48450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 47120 - 47212
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaatgtctgaggt 93  Q
    ||||| |||| ||||||||||||||||||||| | |||| |||||  || |||||||| | |||||| ||||||||| | |||||||| ||||    
T  47120 taactttaaattgtctcaatttggtcccataaatcttcttccgtttactattttggtcctctccgttaatttttaactttaaatgtctaaggt 47212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 77248 - 77130
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtt-atttttaacatcaaa--tgtctgaggttaac 97  Q
    |||||||||||  || ||||||||||||||||| |||||| |||||  || |||||||| | |||||| || ||| ||||||||  ||||| |||| |||    
T  77248 ctaactataaagcgtttcaatttggtcccataaatattctaccgtttactgttttggtcttctccgttaatgtttgacatcaaatgtgtctaaggtgaac 77149  T
Q  98 catatttaaagatggtcca 116  Q
    ||||||||||| |||||||    
T  77148 catatttaaaggtggtcca 77130  T

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Target: scaffold1550 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1550
Description:

Target: scaffold1550; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 206 - 251
Alignment:
Q  2 taactataaaatgtctcaatttggtcccataactattctcccgtta 47  Q
    ||||||||||| |||||||||||||||| || ||||||| ||||||    
T  206 taactataaaacgtctcaatttggtcccttatctattcttccgtta 251  T

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Target: scaffold0177 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1804 - 1872
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    |||| |||||| ||||||||||||||||| ||  | ||||  ||||||||||||||||| | |||||||    
T  1804 ctaattataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 1872  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 145936 - 145868
Alignment:
Q  1 ctaactataaaatgtctcaatttggtcccataactattctcccgttacctcttttggtcatatccgtta 69  Q
    ||||||||||||||||| |||||||||| |||| | || | |||||  || |||||||||| |||||||    
T  145936 ctaactataaaatgtcttaatttggtccaataaatcttatgccgtttactattttggtcatctccgtta 145868  T

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