View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19465_low_5 (Length: 308)
Name: NF19465_low_5
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19465_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 2478017 - 2478289
Alignment:
| Q |
13 |
atactagtttttggtaaaaaataaagtgctannnnnnnnn-ggtaaaaaataaagtgatattttttactattgaaatattcatgtacattttttgatatt |
111 |
Q |
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| T |
2478017 |
atactattttttggtaaaaaataaagtgctattttttttttggtaaaaaataaagtgatattttttactattgaaatattcatgtacattttctgatatt |
2478116 |
T |
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| Q |
112 |
aaattatgccnnnnnnnntctttgaattcattgaattatccatattcgnnnnnnnaattgtaaatttcagatattttgtcattnnnnnnnntccaatttt |
211 |
Q |
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| T |
2478117 |
aaattatgccaaaaaaaatctttgaatacattgaattatccatattcgtttctttaattgtaaatttcagatattttgtcattaaaaaaaatccaatttt |
2478216 |
T |
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| Q |
212 |
taagttaagtaactaatttaaataaatggtctattatcatcaattttatagtaacaaaccaagacacttccct |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478217 |
taagttaagtaactaatttaaataaatggtctattatcatcaattttatagtaacaaaccaagacacttccct |
2478289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 2481007 - 2481074
Alignment:
| Q |
53 |
ggtaaaaaataaagtgatattttttactattgaaatattcatgtacattttttgatattaaattatgcc |
121 |
Q |
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||||||||||||||| ||||||| | ||||||||| |||||||||||||||| ||||| ||||||||| |
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| T |
2481007 |
ggtaaaaaataaagtattattttt-attattgaaattttcatgtacatttttttatattgaattatgcc |
2481074 |
T |
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