View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19465_low_8 (Length: 243)
Name: NF19465_low_8
Description: NF19465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19465_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 24137093 - 24136876
Alignment:
| Q |
11 |
cataggtaattacagtattagaccaaacaaaacctcatcctacattataattataacnnnnnnnnnntattaaagttcatcgagaaaattcatctaaaat |
110 |
Q |
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| T |
24137093 |
cataggttagtacagtattagaccaaacaaaacctcatcctacattataattataacaaaaaaaaa-tattaaagttcatcgagaaaattcatctaaaat |
24136995 |
T |
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| Q |
111 |
cactttttgaacatgtcacgtgaacttttgttaaaaagaaaggactaatattgataacagaaatttatagaaatactttatgctacacaatttatgctta |
210 |
Q |
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| T |
24136994 |
cactttttgaacatgtcacgtgaacttttgttaaaaagaaaggactaatattgctaacagaaatttatagaaatactgtatgctacacaatttatgctta |
24136895 |
T |
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| Q |
211 |
taaaaacattagataactg |
229 |
Q |
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| T |
24136894 |
taaaaacattagataactg |
24136876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 24125486 - 24125424
Alignment:
| Q |
119 |
gaacatgtcacgtgaacttttgttaaaaagaaaggactaatattgataacagaaatttataga |
181 |
Q |
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| T |
24125486 |
gaacatttcacatgaacttttgttaaaatgaaaggagtaatattagtaacaaaaatttataga |
24125424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 24144817 - 24144777
Alignment:
| Q |
26 |
tattagaccaaacaaaacctcatcctacattataattataa |
66 |
Q |
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| T |
24144817 |
tattagaccaaacataatctcatcctacattataattataa |
24144777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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