View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19466_high_1 (Length: 686)
Name: NF19466_high_1
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 669
Target Start/End: Original strand, 28260367 - 28261031
Alignment:
| Q |
16 |
aatatcgatctcataggaaatattttgtttggagaaaagaaga---gatctgctatgatgttcgattttcgatcaactggtcaacctcttgtcgatgatt |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| || ||||||||||||||||||| |
|
|
| T |
28260367 |
aatatcgatctcatagaaaatattttgtttggagaaaagaagaagagctctgctatgatgtttgattttcggtcaattgaccaacctcttgtcgatgatt |
28260466 |
T |
|
| Q |
113 |
gggactgtcttaaaatatttgtaagaaaaataacacaaaatattattagtattgccactttcttgaattttaag---ttagacatcaattgttttgaata |
209 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||| |
|
|
| T |
28260467 |
ggaactgtcttaaaatacttgtaagaaaaataacacaaaatattattagtattgccactttctcaaacactaacccatttatgatcaattgttttgaata |
28260566 |
T |
|
| Q |
210 |
catgcattgtttaacatatatgtgatggtattatacatgttacacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtca |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28260567 |
catgtattgtttaacatatatgtgatggtattatacatgttacacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtca |
28260666 |
T |
|
| Q |
310 |
ttgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28260667 |
gtgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatct |
28260766 |
T |
|
| Q |
410 |
caagtttgtccagggatataacaataaggggtgtctaatatggatctagttcaaaggttgaccttactattttaagtaaattttattataatataatacc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28260767 |
caagtttgtccagggatataacaataaggggtgtctaatatggatctagttcaaaggttgaccttactattttaagtaaattttattataatataatacc |
28260866 |
T |
|
| Q |
510 |
cgtcctcaatttttattataaaattcatcttttattgaaaatagtaagggt-----cttggaaaatattttagagatccatcttattatatgcacttgtt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28260867 |
tgtcctcaatttttattataaaattcatcttttattgaaaatagtaagggtccacacttggacaatattttagagatccatcttattatatgcacttgtt |
28260966 |
T |
|
| Q |
605 |
ataacaaatatatcaataaatcagctattgcttcattctacaatatgtattgtccttcttgtatt |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28260967 |
ataacaaatatatcaataaatcagctattgcttcattctacaatatgtattgtccttcttgtatt |
28261031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 196 - 418
Target Start/End: Original strand, 29929557 - 29929783
Alignment:
| Q |
196 |
aattgttttgaatacatgcattgtttaacatatatgtgatggtattatacatgtt-acacattaagtcaccatgtttacgtaatattttatgcagtttaa |
294 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
29929557 |
aattgctttaaatacatgcattgtttaacatatatatgatggtattatacatgtttacacattaagtcaccaagtttacataatattttatgcagtttaa |
29929656 |
T |
|
| Q |
295 |
aacttatgagagtcattgtggtatc---ttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaa |
391 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
29929657 |
aacttatgagagtcattgtggtatcttattatcaacctatggaaggaaatactcaagagtctttgcttatatgtgcaatattggcatttttgaaaagcaa |
29929756 |
T |
|
| Q |
392 |
atgattgcagtagtatctcaagtttgt |
418 |
Q |
| |
|
| |||| ||| |||||||||||||||| |
|
|
| T |
29929757 |
acgatttcagcagtatctcaagtttgt |
29929783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 29929336 - 29929510
Alignment:
| Q |
16 |
aatatcgatctcataggaaatattttgtttggagaaaagaagagatctgctatgatgttcgattttcgatcaactggtcaacctcttgtcgatgattggg |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
29929336 |
aatatccatctcataggaaatattttgtttggagaaaagaagagctccattatgatgtctgatttacgttcagctggtcaacctctaatcgatgattgga |
29929435 |
T |
|
| Q |
116 |
actgtcttaaaatatttgtaagaaaaataacacaaaatattattagtattgccactttcttgaattttaagttag |
190 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29929436 |
actgtcttaaaatacttgtaagaagaataacacaaaatattattagtattgccactatcttgaattttaagttag |
29929510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 11329102 - 11329208
Alignment:
| Q |
265 |
catgtttacgtaatattttatgcagtttaaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatg |
364 |
Q |
| |
|
||||||| | ||||||||||||||| | ||||||||||||||||| ||||||| | |||||| ||||||||||||||||| | |||||||||| ||||| |
|
|
| T |
11329102 |
catgttttcttaatattttatgcaggtaaaaacttatgagagtcactgtggtaccctatcaagctatggaaggaaatacttgagagcctttgctaatatg |
11329201 |
T |
|
| Q |
365 |
tgtaata |
371 |
Q |
| |
|
||||||| |
|
|
| T |
11329202 |
tgtaata |
11329208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 418
Target Start/End: Original strand, 470831 - 470956
Alignment:
| Q |
293 |
aaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaa |
392 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| ||||||||||| || ||||||| | ||||| || | ||||||| |||||||||| |
|
|
| T |
470831 |
aaaacttatgaacgtcattgtggtatcttatcaacacatggaatgaaatactcaagagtctttgctaacatgtgcaacgtcggcatttatgagaagcaaa |
470930 |
T |
|
| Q |
393 |
tgattgcagtagtatctcaagtttgt |
418 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
470931 |
tgattgcaacaatatctcaagtttgt |
470956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 29929836 - 29929902
Alignment:
| Q |
437 |
ggggtgtctaatatggatctagttcaaaggttgaccttactattttaagtaaattttattataatat |
503 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| |||||| ||||||||| ||| |||||| |
|
|
| T |
29929836 |
ggggtgtctaatgtggatctagtccaaaggtagaccttgttatttttagtaaatttgattttaatat |
29929902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 2288335 - 2288291
Alignment:
| Q |
98 |
ctcttgtcgatgattgggactgtcttaaaatatttgtaagaaaaa |
142 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
2288335 |
ctcttgtggatgattgggattgtcttaaaatgcttgtaagaaaaa |
2288291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 3647551 - 3647515
Alignment:
| Q |
472 |
cttactattttaagtaaattttattataatataatac |
508 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
3647551 |
cttactattttaagtaaattttaataaaatataatac |
3647515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University