View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_high_12 (Length: 238)
Name: NF19466_high_12
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35046809 - 35047030
Alignment:
| Q |
1 |
aaaatgtcaaacactaatccttaatgttttaggaaaattaaaatccaattgaaccaaactttatatgattgtgattaagcaaaactaaaatggtattgta |
100 |
Q |
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| T |
35046809 |
aaaatgtcaaacactaatctttaatgttttaggaaaattaaaatccaattgaaccaaactttatatgattgtgattaagcaaaactaaaatggtattgta |
35046908 |
T |
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| Q |
101 |
catacttctcagggtggaagttttctactcctaggtcctcatcccaaaggaaaatataatcatactcagcaactatgtcgggatgtaagaaacgcttcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35046909 |
catacttctcagggtggaagttttctactcctaggtcctcatcccaaaggaaaatataatcatactcagcaactatgtcgggatgtaagaaacgcttcgc |
35047008 |
T |
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| Q |
201 |
aaaccacctagtcattgaaaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35047009 |
aaaccacctagtcattgaaaac |
35047030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17683070 - 17682948
Alignment:
| Q |
1 |
aaaatgtcaaacactaatccttaatgttttaggaaaattaaaatccaattgaaccaaactttatatgattgtgattaagcaaaact-aaaatggtattgt |
99 |
Q |
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|||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||| | | |
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| T |
17683070 |
aaaatgtcaaacactaatccttaatgattttgaaaaattaaaatccaatagaaccaaactttctatgattgtgattaagcagaactgaaaatccaa---t |
17682974 |
T |
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| Q |
100 |
acatacttctcagggtggaagttttc |
125 |
Q |
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| T |
17682973 |
acatacttctcagggtggaagttttc |
17682948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 132196 - 132119
Alignment:
| Q |
133 |
aggtcctcatcccaaaggaaaatataatcatactcagcaactatgtcgggatgtaagaaacgcttcgcaaaccaccta |
210 |
Q |
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|||||||||||||| || || ||||||| || |||||||||||||| ||||| || || || || |||||||||||| |
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| T |
132196 |
aggtcctcatcccagagaaatatataattgtagtcagcaactatgtctggatgcaaaaatcgttttgcaaaccaccta |
132119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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