View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_high_2 (Length: 519)
Name: NF19466_high_2
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Complemental strand, 24890288 - 24889800
Alignment:
| Q |
20 |
aacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890288 |
aacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatg |
24890189 |
T |
|
| Q |
120 |
tgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagc |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890188 |
tgttgaggcacttcattcctctaatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagc |
24890089 |
T |
|
| Q |
220 |
acttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaat |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
24890088 |
acttgtagcaccttattgtgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgcctaaaggaatggcagtagtggcactgaat |
24889989 |
T |
|
| Q |
320 |
ccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggattcagaggcagccaccaaga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24889988 |
ccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggcttcagaggcagccaccaaga |
24889889 |
T |
|
| Q |
420 |
tactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctcctagctacgtgattgattatcaactttattagtatt |
508 |
Q |
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| T |
24889888 |
tactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctcctagctacatgattgattatcaactctattagtatt |
24889800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 470
Target Start/End: Complemental strand, 26560829 - 26560379
Alignment:
| Q |
20 |
aacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatg |
119 |
Q |
| |
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|||||||| || ||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
26560829 |
aacggcgccggagtcgttaacaagaacaacaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatg |
26560730 |
T |
|
| Q |
120 |
tgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagc |
219 |
Q |
| |
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||||||||| |||||| ||| ||||| | || || ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| || |
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| T |
26560729 |
tgttgaggcccttcatacctttgatggttaaaaataaaaagtatgaagagggagggataatagtgaacatgtcttcaggttggggaagatcagttgctgc |
26560630 |
T |
|
| Q |
220 |
acttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaat |
319 |
Q |
| |
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||||||||||||||| | || |||||||||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||||| |||||||||||| |
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| T |
26560629 |
acttgtagcaccttactgtgtatccaaatgggcaattgaaggacttaccaagtctgttgttgaagagttgcctaaagtaatggcagtggtggcactcaat |
26560530 |
T |
|
| Q |
320 |
ccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggattcagaggcagccaccaaga |
419 |
Q |
| |
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||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||||||| |
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| T |
26560529 |
ccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcctcatctctttatcgattcccagaatcatgggttttggaggcagccaccaaga |
26560430 |
T |
|
| Q |
420 |
tactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtc |
470 |
Q |
| |
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|||||||||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
26560429 |
tactcaatcttacaccaacagataatggttcttctctctctatttgaagtc |
26560379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 205 - 470
Target Start/End: Original strand, 26562943 - 26563208
Alignment:
| Q |
205 |
aagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggca |
304 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
26562943 |
aagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
26563042 |
T |
|
| Q |
305 |
gtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggattcag |
404 |
Q |
| |
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|| ||||||||||| |||||||||||| |||| |||| ||||| || ||||| |||||||||||||| || |||||||||||||||||||||| || | |
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| T |
26563043 |
gtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
26563142 |
T |
|
| Q |
405 |
aggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtc |
470 |
Q |
| |
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||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
26563143 |
aggaagccaccaaaatactcaatcttacacccacaaacaatggtgcttctctctctatttgaagtc |
26563208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 38 - 397
Target Start/End: Original strand, 56436799 - 56437152
Alignment:
| Q |
38 |
aacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatgtgttgaggcacttcattc |
137 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || ||||| | |
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| T |
56436799 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatcc |
56436898 |
T |
|
| Q |
138 |
ctctgatgatcgccaagaacaagaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattc |
237 |
Q |
| |
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|||| |||||| ||||| | | | ||| || ||||| ||| |||||||||||||||||||||| |||||||||||||| || ||||| | |
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| T |
56436899 |
ctctcatgatc------aacaatggaggaggagaaggtattatagttaacttgtcttctggttggggaagatcgggtgcagcacttgttgctccttactg |
56436992 |
T |
|
| Q |
238 |
tgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaatccaggagtcatcaacact |
337 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||| ||| ||||||| || |||||||||| || || ||||||||||| || |||||||||||| |
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|
| T |
56436993 |
tgcatccaaatgggctattgaaggactcacaaagtctgtagctaaagagttaccacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacact |
56437092 |
T |
|
| Q |
338 |
gacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgg |
397 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | || |||||||||||||| ||||||||| |
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|
| T |
56437093 |
gacatgcttgcttcttgctttggtgcttccgcttctctttatcaatcccctgaatcatgg |
56437152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 26562785 - 26562944
Alignment:
| Q |
20 |
aacggcgctggcgtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatg |
119 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
26562785 |
aacgacgctggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaatg |
26562884 |
T |
|
| Q |
120 |
tgttgaggcacttcattcctctgatgatcgccaagaacaagaatgaaatgggagggataa |
179 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||||||||| ||||||||||| |
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|
| T |
26562885 |
tgttgaggcacttcatttctttgatggttaaaaagaacaagaatgaagagggagggataa |
26562944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 56437245 - 56437312
Alignment:
| Q |
405 |
aggcagccaccaagatactcaatcttacacctgcagacaatggtgcttctctctctatttgaagtctc |
472 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
56437245 |
aggcagccaccatgattctcaatcttactccagcagataatggtgcttctctctccgtttgaagtctc |
56437312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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