View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19466_high_6 (Length: 391)
Name: NF19466_high_6
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_high_6 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 43183066 - 43182687
Alignment:
| Q |
7 |
acatcatcatcataaatggtattataattgatataatccgaattttttggcttgtaccatgcttagaataacattgttccacaatgtgacctagcttgtt |
106 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43183066 |
acattatcatcataaatagtattataattgatataatccgaattttttggcttgtaccatgcttagaataacattgttccacaatgtgacctagcttgtt |
43182967 |
T |
|
| Q |
107 |
gcaaaatgagaattgtcccaagaggaccacgaccttttaatttccattattgcaatgaccataacaattgatcttccactctgtgtagggaaccaaggtc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43182966 |
gcaaaatgagaattgtcccaagaggaccacgacctttt-----ccattattgcaatgaccataac--ttgatcttccactctgtgtagggaaccaaggtc |
43182874 |
T |
|
| Q |
207 |
tttcagtagagttgaaaagaattttggcatcatcattagcagtgccaaagttccatacgtagaatttgtgatttaacaaaattgtagggatcacttaaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43182873 |
tttcagtagagttgaaaagaattttggcatcatcattagcagtgccaaagttccatacgtagaatttgtgatttaacaaaattgtagggatcacttaaac |
43182774 |
T |
|
| Q |
307 |
cgttcaacaagtttacaacacattcaaaatctcgaagcaactcgatgtc--tgagatatccacaagaatatttcacagaacacatac |
391 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43182773 |
cattcaacaagtttacaacacattcaaaatctcgaagcaactcgatgtctttgagatatccacaagaatatttcacagaacacatac |
43182687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 43063493 - 43063576
Alignment:
| Q |
308 |
gttcaacaagtttacaacacattcaaaatctcgaagcaactcgatgtctgagatatccacaagaatatttcacagaacacatac |
391 |
Q |
| |
|
|||||| ||| |||||| ||||||| ||| ||| ||||||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
43063493 |
gttcaagaagcttacaaaacattcagaatttcgttagaactcgatgtcgcaaatatccagaagaatatttcacagaacacatac |
43063576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University