View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_high_9 (Length: 293)
Name: NF19466_high_9
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 12312790 - 12313071
Alignment:
| Q |
1 |
gagttgataggacagtccttaccatatatcgaccaacattggccgaacnnnnnnnnnn----catagagttttcttcatctaaagtatttttatttgaaa |
96 |
Q |
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| T |
12312790 |
gagttgataggatagtccttaccatatatcgaccaacattggccaaactttttattttttttcatagaattttcttcatctgaagtatttttatttgaaa |
12312889 |
T |
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| Q |
97 |
tattgccgtacattaaatatgaacatctatctcaatcaggatttgaacatcagctcctcacataatgagagtctaatccttccgttagactcagctgctt |
196 |
Q |
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| T |
12312890 |
tattgtcgtacataaaatataaacatctatctcaatcaggatttgaacatcaactcctcacataatgagagtctaatccttccgttagactcaactgctt |
12312989 |
T |
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| Q |
197 |
cgaagtcg-aacatgctattctagtacttaggattttgctgttggtttggatataaatatttttatataataaccatgttat |
277 |
Q |
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||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12312990 |
cgatgtcgaaacatgctagtctagtacttaggattttgctgttggtttggatataaatatttttatataataaccatgttat |
12313071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 12284633 - 12284918
Alignment:
| Q |
1 |
gagttgataggacagtccttaccatatatcgaccaacattggccgaacnnnnnnnnnncat--agagttttcttcatctaaagtatttttatttgaaata |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| |
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| T |
12284633 |
gagttgataggacagtccttaccatatatcgaccaacattggccgaattttttattttttttcagagttttcttcatctaaagtatgtttatttaaaata |
12284732 |
T |
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| Q |
99 |
ttgccgtacattaaatatgaacatctatctcaatcaggatttgaacatcagctcctcacataatgagagtctaatccttccgttagactcagctgcttcg |
198 |
Q |
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|| ||||||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||| |
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| T |
12284733 |
ttatcgtacataaaatattaacatctatctcaatcagaatttgaacatcaactcctcatataatgagagtctaatccttctgttagactcaactgcttcg |
12284832 |
T |
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| Q |
199 |
aagtcgaacatgc----tattctagtacttaggattttgctgttggtttggatata---aatatttttatataataaccatgttat |
277 |
Q |
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| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
12284833 |
atgtcgaacatgctatatattctagtacttaggattttgctgttggtttggatataaataatatttttatataataaacatgttat |
12284918 |
T |
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