View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_low_3 (Length: 454)
Name: NF19466_low_3
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 437
Target Start/End: Complemental strand, 2619372 - 2618955
Alignment:
| Q |
21 |
taagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619372 |
taagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaa |
2619273 |
T |
|
| Q |
121 |
tcaaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacatctttaaggcctaatctcaacgtttcagaaacaatgcgtgagat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619272 |
tcaaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacatctttaaggcctaatctcaacgtttcagaaacaatgcgtgagat |
2619173 |
T |
|
| Q |
221 |
tctaatagctgaacggtggccttgtttgtttgtgtatggaaaatttgatgtgtcggttgagattttcaccggtggtagaccttcgtttcgatttgttttc |
320 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2619172 |
tctaatagcggaacggtggccttgtttgtttgtgtatggaaaatttgatgtgtcggttgagattttcaccggtggtagaccttcgtttggatttgttttc |
2619073 |
T |
|
| Q |
321 |
acattgtcgtccatccacactattcctctcattttcttctcattgtacctgtttacaccaa-aaaatatataattagtcgaatcatgtattgaccaattg |
419 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2619072 |
acgttgtcgtccatccacactattcctctcattttcttctcattgtacctgtttacaccaaaaaaatatataattagtcgaatcatgtattgaccaattg |
2618973 |
T |
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| Q |
420 |
actaaagtggaatcaact |
437 |
Q |
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|||||||||||||||||| |
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| T |
2618972 |
actaaagtggaatcaact |
2618955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 11092085 - 11091929
Alignment:
| Q |
21 |
taagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatcatacttattcaaaaccctaa |
120 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||| || ||||| || ||||||||||| || |||||||| ||| |
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| T |
11092085 |
taagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgatcatatttcttcaaaacattaa |
11091986 |
T |
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| Q |
121 |
tcaaattattcgtcacaaacaccgtgtcgtcatctcccattacaaaccacctcacat |
177 |
Q |
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| T |
11091985 |
ccaaattctcagcaacaaaaaatgtatcatcatcacccatcacaaaccacctcacat |
11091929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 41319858 - 41319937
Alignment:
| Q |
21 |
taagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatc |
100 |
Q |
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|||||||||||||| ||||| | ||||||||||||||||| || |||||||| ||||| || ||||| || |||||||| |
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| T |
41319858 |
taagccataccataggaaaagaaaatattctgcaaatgactttcagataaacttccaatgtaataaaattgattatgatc |
41319937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 30748947 - 30748907
Alignment:
| Q |
137 |
aaacaccgtgtcgtcatctcccattacaaaccacctcacat |
177 |
Q |
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||||||||| || ||||||||||||||||||||||| |||| |
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| T |
30748947 |
aaacaccgtatcatcatctcccattacaaaccacctaacat |
30748907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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