View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19466_low_4 (Length: 451)
Name: NF19466_low_4
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 22041650 - 22041220
Alignment:
| Q |
1 |
taacaaaatgtatttgataaagatgttaaccttgatacatcaagaaggaactttgtggtcaaatcatttgattattttctaaggaattataaatcaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041650 |
taacaaaatgtatttgataaagatgttaaccttgatacatcaagaaggaactttgtggtcaaatcatttgattattttctaaggaattataaatcaactc |
22041551 |
T |
|
| Q |
101 |
tctgcaatggctataaaatgttcaactctttcttttcttttatttgnnnnnnnn--ctgctctacctttatgtgatacaaacaaaaataattaaccatga |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041550 |
tctgcaatggctataaaatgttcaagtctttcttttcttttatttgaaaaaaaaaactgctctacctttatgtgatacaaacaaaaataattaaccatga |
22041451 |
T |
|
| Q |
199 |
atttacaacaatttggaaagtgttttatggagctatcaaaaggtgtaggatatagatgaaaccaaaggaatgcagcaaggaagatggaaaccaaagtaac |
298 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041450 |
atttacaacaatttggaaagtgtttaatggagctatcaaaaggtgtaggata--gatgaaaccaaaggaatgcagcaaggaagatggaaaccaaagtaac |
22041353 |
T |
|
| Q |
299 |
atgataat-ataaaactctatgcttataatttatgtctaaatcaagcatgctcctgttaaatgagcatataattacaaagccatcctataaacaatgcaa |
397 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041352 |
atgataattataaaactctatgcttataatttatgtctaaatcaagcatgctcctgttaaatgagcatataattacaaagccatcctataaacaatgcaa |
22041253 |
T |
|
| Q |
398 |
aaactttcagattcttttgcaatgaaaaccatg |
430 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
22041252 |
aaactttcagattcttttgcaacgaaaaccatg |
22041220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 22038323 - 22038243
Alignment:
| Q |
350 |
cctgttaaatgagcatataattacaaagccatcctataaacaatgcaaaaactttcagattcttttgcaatgaaaaccatg |
430 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22038323 |
cctgttaaaagagcatataataacaaagccatcctataaactatgccaaaactttcggattcttctgcaatgaaaaccatg |
22038243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University