View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_low_5 (Length: 449)
Name: NF19466_low_5
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 162 - 433
Target Start/End: Complemental strand, 33291159 - 33290892
Alignment:
| Q |
162 |
cgattttatacaatgttcaatatctttggaactggttaatactagtttttatttggatatatttcgatgtaaagtatttgaagcataccgatcgacacaa |
261 |
Q |
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| T |
33291159 |
cgattttatacaattttcaatatctttggaattggttaatactagtttttatttggata-atttcgatgtcaagtatttgaagcaaaccgatcgacacaa |
33291061 |
T |
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| Q |
262 |
aattttactgtattaaccaatataaaaccgattaaagaaaatacatttgttttaatcgattcaaataaaagttgcaaccaactnnnnnnnnttgagaagt |
361 |
Q |
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| T |
33291060 |
aattttactgtattaaccaatataaaaccgattaaagaaaatacatttgttttaatcgattcaaataaaagttgcaaccaactaaaaaaaattgagaagt |
33290961 |
T |
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| Q |
362 |
tctt-nnnnnnnntattgagaagtatttgtagaatatatatcaaagttctacaaaccatgcacagcgtatttg |
433 |
Q |
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| T |
33290960 |
tcttcaaaaaaaatattgagaagtatttgtaga----atatcaaagttctacagaccatgcacagcgtatttg |
33290892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 33291815 - 33291686
Alignment:
| Q |
14 |
atctattttcatatcattaagagtaaaccttataactttcatcaagtcttcttttacaggtcttgtgttggaaggcttttccatttatgtaatataattc |
113 |
Q |
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| T |
33291815 |
atctattttcatatcattaagagtaaaccttataactttcatcaagtcttcttttacaggtcttgtgttggaaggcttttccgtttatgtaatatgattc |
33291716 |
T |
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| Q |
114 |
attttgacttattaaaaaaattattttact |
143 |
Q |
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| T |
33291715 |
atattgacttattaaaaaaattattttact |
33291686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 133
Target Start/End: Complemental strand, 16241220 - 16241190
Alignment:
| Q |
103 |
taatataattcattttgacttattaaaaaaa |
133 |
Q |
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| T |
16241220 |
taatataattcattttgacttattaaaaaaa |
16241190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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