View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_low_6 (Length: 426)
Name: NF19466_low_6
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 49415521 - 49415119
Alignment:
| Q |
11 |
atcatcacaatgaaggtaagaatggcattttggaatttggagcaatttttatgaatataaacgatgttgtcatttattttttgaaaactctcggattgag |
110 |
Q |
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| T |
49415521 |
atcattacaatgaaggtaagaatgacattttggaatttggagcaatttttatgaatataaacgatgttgtcacttattttttgaaaactctcggattgag |
49415422 |
T |
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| Q |
111 |
tttaattagagacaaacaagtgagatagttcatactcttgcaagagatatcttattcttaactactagtttctatattttcattgatgta-ccccttgta |
209 |
Q |
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| T |
49415421 |
tttaattaaagacaaacaagtgagatagttcatactcttgcaagagataccttattcttaactactattttctatattttcattgatgtacccccttgta |
49415322 |
T |
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| Q |
210 |
tcttggatttgattgaaatgcaatgtgtttattatttcctnnnnnnncaattagcacatgattacgtgag---tcttataattgttcaaaaccctcatga |
306 |
Q |
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| T |
49415321 |
tcttggatttgattgaaatgcaatgtgtttattatttcctaaaaaaacaattagcacatgattacgtgagtcttcttataattgttcaaaaccctcatga |
49415222 |
T |
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| Q |
307 |
cataattatgaggtaatgctgatgcaaaattgcgcacaatcacctgtga-nnnnnnnnnagaggacaatcacctgtgattaatagataaacgtgcgacga |
405 |
Q |
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| T |
49415221 |
cataattatgaggtaatgctgatgcaaaattgcgcacaatcacctgtgattttttttttagaggacaatcacctgtgattaatagataaacgtgcgacga |
49415122 |
T |
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| Q |
406 |
cca |
408 |
Q |
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| T |
49415121 |
cca |
49415119 |
T |
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