View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19466_low_8 (Length: 323)
Name: NF19466_low_8
Description: NF19466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19466_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 43182696 - 43182388
Alignment:
| Q |
1 |
gaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaactgaagagattagttacatattgttcaccttgtttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43182696 |
gaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaagtgaagagattagttacatattgttcaccttgtttga |
43182597 |
T |
|
| Q |
101 |
aagagggttttggcattgtcgatttagtcagcgctagaagaaatttgaggtgaa--aagactgcaagtaatccaatatacaaacatgctgttacatcgtt |
198 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43182596 |
aagagggttttggcattgtcggtttagtcagcgctagaagaaatttgaggtgaaagaagacagcaagtaatccaatatacaaacatgctgttacatcgtt |
43182497 |
T |
|
| Q |
199 |
cccataaatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcctgaatgtggaagcatgcataaaatgatgcgcctaat |
298 |
Q |
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| T |
43182496 |
cccataaatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcttgaatgtggaagcatgcataaaatgatgcgcctaat |
43182397 |
T |
|
| Q |
299 |
ggctaatac |
307 |
Q |
| |
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||||||||| |
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| T |
43182396 |
ggctaatac |
43182388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 107 - 298
Target Start/End: Original strand, 43063745 - 43063931
Alignment:
| Q |
107 |
gttttggcattgtcgatttagtcagcgctagaagaaatttgaggtgaaaagactgcaagtaatccaatatacaaacatgctgttacatcgttcccataaa |
206 |
Q |
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|||||||||||||||||||||||| | ||||||| |||||||| || || ||| || | |||||||| |||| | || |||||||||| ||||||| || |
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| T |
43063745 |
gttttggcattgtcgatttagtcaaccctagaagcaatttgagatggaa-gacagcgattaatccaagataccaccaagctgttacattgttcccaagaa |
43063843 |
T |
|
| Q |
207 |
tcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcctgaatgtggaagcatgcataaaatgatgcgcctaat |
298 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
43063844 |
tcgaacttaacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcat----aaaatgatgcgcttaat |
43063931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 43063567 - 43063671
Alignment:
| Q |
1 |
gaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaactgaagagattagttacatattgttcaccttgtttga |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||| ||||| | ||||||||| || |||| ||||||||||||||| || || ||||||||| |
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| T |
43063567 |
gaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcgtacatcttgtttga |
43063666 |
T |
|
| Q |
101 |
aagag |
105 |
Q |
| |
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||||| |
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| T |
43063667 |
aagag |
43063671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 268
Target Start/End: Complemental strand, 43180392 - 43180228
Alignment:
| Q |
102 |
agagggttttggcattgtcgatttagtcagcgctagaagaaatttgaggtgaaaagactgcaagtaatccaatatacaaacatgctgttacatcgttccc |
201 |
Q |
| |
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||||||||||||| || |||||| ||| | ||||||||||||||||||| |||| |||||| | |||| ||| || | | |||| ||||||||||| | |
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| T |
43180392 |
agagggttttggctttctcgatt-agtgaacgctagaagaaatttgaggcgaaa-gactgcgattaattcaagatgccactatgccattacatcgttctc |
43180295 |
T |
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| Q |
202 |
ataaatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcctgaatg |
268 |
Q |
| |
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| ||| ||||||||||||||||||| | |||||| ||||||||||||||||| |||||| |||||| |
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| T |
43180294 |
aagaattgaacttaacatcatcttagctccatggtggaaggatttgattaacagaaaggcatgaatg |
43180228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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