View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_high_21 (Length: 391)
Name: NF19467_high_21
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 51945143 - 51944833
Alignment:
| Q |
13 |
aatatccacattgaaccatctaaatcaaaataatcctcggcgtaacttagcttgtgttgctcaggcaaatcagttctcgtattatttttggtaaagatgt |
112 |
Q |
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| T |
51945143 |
aatatccacattgaaccatctaaatcaaaataatcctcggcgtaacttagcttgtgttgctcaggcaaattagttctcgtattatttttggtaaagatgt |
51945044 |
T |
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| Q |
113 |
gaactctttaatgagactatgaaaattgtcaagtgacaaggcccacctaataacgatgcttcttagctgtgnnnnnnnccctccaaagaaacgaagcttc |
212 |
Q |
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| T |
51945043 |
gaactctttaatgagactatgaaaattgtcaagtgacaaggcccacctaataacgatgcttcttagctgtgttttttttcctccaaagaaacgaagcttc |
51944944 |
T |
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| Q |
213 |
tatccttcagtcgtcatggaactattgttatgcacgtccttcacaacttttgaccatcaataaaacgcgctgtttggtggaagtgtcacttgcatgcatg |
312 |
Q |
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| T |
51944943 |
taaccttcagtcgtcatggaactattgttatgcacgtccttcacaacttttgaccatcaataaaacgcgctgtttggtggaagtgtcatttgcatgcatg |
51944844 |
T |
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| Q |
313 |
gggggatgaaa |
323 |
Q |
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| | ||||||| |
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| T |
51944843 |
gagagatgaaa |
51944833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 51944434 - 51944377
Alignment:
| Q |
315 |
gggatgaaaacggaaaatacttggacgatattggggtgtcaatgttaggtgatattga |
372 |
Q |
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| T |
51944434 |
gggatgaaaacggaaaatacttggatgatattagggtgtcaatgttaggtgatattga |
51944377 |
T |
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