View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19467_high_29 (Length: 316)

Name: NF19467_high_29

Description: NF19467

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19467_high_29

[»] chr3 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 124; E-Value: 9e-64

Query Start/End: Original strand, 146 - 305

Target Start/End: Original strand, 38296242 - 38296406

Alignment:

Q	146	atcttcacatgtttagttgattatagacttaa-gaaaattttattttgatgatttctcaacaaaatacacgtggttcttgtatgagaagcttcatttact	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	38296242	atcttcacatgtttagttgattatagacttaaagaaaattttattttgatgatttctcaacaagatacacatggttcttgtatgagaaacttcatttact	38296341	T

Q	245	aaaaataaggtaaaatgtcatatgca----tattttttatgataaatgttagttgttataatttt	305	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38296342	aaaaataagataaaatgtcatatgcatatttattttttatgataaatgttagttgttataatttt	38296406	T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 1 - 59

Target Start/End: Original strand, 9567699 - 9567757

Alignment:

Q	1	caattttcaagcatcagtctaccgaagatcatatggcacaattacatacaacagaagag	59	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	9567699	caattttcaagcatcggtccaccgtagatcatgtgacacaattccatacaatagaagag	9567757	T

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