View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_high_36 (Length: 283)
Name: NF19467_high_36
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 4523587 - 4523858
Alignment:
| Q |
1 |
caataacatttaagtacaatttcttttggnnnnnnnnttacaaattttaggccactttcagatccattataggttttcaaaagaatttttgaaatagcaa |
100 |
Q |
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| T |
4523587 |
caataacatttaagtacaatttcttttggaaaaaaaattacaaattttaggccactttcagatccattataggttttcaaaagaatttttgaaatagcaa |
4523686 |
T |
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| Q |
101 |
taccattgacc------aatagtttcttnnnnnnnnnnngggatactttggacaatagttagtttacttgggtgcaattgttgctgagtgccaaaatatt |
194 |
Q |
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| T |
4523687 |
tatcattgaccacgttaacaagtttctt--aaaaaaagggggatactttggacaatagttag-ttacttaggtgcaattgttgctgagtgccaaaatatt |
4523783 |
T |
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| Q |
195 |
atgaacatttttatta-nnnnnnnatgtttgaagagaagctaatcaagctgctcactattttacaaaatatgcaa |
268 |
Q |
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||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4523784 |
atgaacaattttattatttttttcatgttagaagagaagctaatcaagctgctcactattttgcaaaatatgcaa |
4523858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 19119751 - 19119715
Alignment:
| Q |
218 |
atgtttgaagagaagctaatcaagctgctcactattt |
254 |
Q |
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| T |
19119751 |
atgtttgaagagaagctaatcaagctggccactattt |
19119715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 20781970 - 20782006
Alignment:
| Q |
218 |
atgtttgaagagaagctaatcaagctgctcactattt |
254 |
Q |
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| T |
20781970 |
atgttagaagagaagctaatcaagctgctcattattt |
20782006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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