View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19467_high_51 (Length: 242)
Name: NF19467_high_51
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_high_51 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 37769115 - 37769327
Alignment:
| Q |
25 |
gcaagaaaatttatatgatgagaggaaattcaatataaagagtatgctgtgcaacatatatgagctttttaaattacgtttaagtnnnnnnnnntgttgt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37769115 |
gcaagaaaatttatatgatgagaggaaattcaatataaagaatatgctgtgcaacatatatgagctttttaaattacgtttaagtaaaaaaa-----tgt |
37769209 |
T |
|
| Q |
125 |
caagatattcctattgtttcaaattaattaaggtgcaaaatgagcacttaattacctttcgaaaataagagcaagaggaatagtagtaacagctgcaaag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37769210 |
caagatattcctattgtttcaaattaattaaggtgcaaaatgagcacttaattacctttcgaaaataagagcaagaggaatagtagtaacagctgcaaag |
37769309 |
T |
|
| Q |
225 |
gcgagacgataggctgca |
242 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37769310 |
gcgagacgataggctgca |
37769327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University