View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19467_high_8 (Length: 495)
Name: NF19467_high_8
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 52671241 - 52671127
Alignment:
| Q |
356 |
catattattaccattattatgctttacataatgttgtcaactagtataatcttctctacttttttaattttgttttacatatgatatctcttcttccaag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52671241 |
catattattaccattattatgctttacataatgttgccaacta---taatcttctctacttttttaattttgttttacatatgatatctcttcttccaag |
52671145 |
T |
|
| Q |
456 |
taaaactgaagcaaaact |
473 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
52671144 |
taaaactgatgcaaaact |
52671127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 14360724 - 14360902
Alignment:
| Q |
65 |
gaatatgatatacttttggctttggtttctttgggagttgggattgtgaatgaaaactctttatgttcttacttcaaagccctgtgattattaatattaa |
164 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||||| |||||||||| | ||| ||||||||||||||||||| | || ||||||||| |||||| |
|
|
| T |
14360724 |
gaatatggtataattttggctttggtttatttgggagttgagattgtgaatagagactttttatgttcttacttcaaaactctctgattattagtattaa |
14360823 |
T |
|
| Q |
165 |
gc----tttcaaacccattgaaagagaaaggatttgaagtctgaaagagggtgcttgcaatgagagagacaaagttgat |
239 |
Q |
| |
|
|| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
14360824 |
gcttaatttcaaacccattgaaagagaaaagatatgaagtctgaaagagggaccttgcaacaagagagataaagttgat |
14360902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 17591229 - 17591286
Alignment:
| Q |
236 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
293 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
17591229 |
tgatgttgctggtggtgggtggcatggatgagagagaagggtgatagtgggtggaaga |
17591286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 36912920 - 36912957
Alignment:
| Q |
288 |
ggaagaaaaaattcaaatgtgaagagactatcataaga |
325 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36912920 |
ggaagaaaaaaatcaagtgtgaagagactatcataaga |
36912957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 19130239 - 19130296
Alignment:
| Q |
236 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
293 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19130239 |
tgatgttgcaggtggtgggtggcatggaggagagagaagggtgatagtgggtggaaga |
19130296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 14735560 - 14735503
Alignment:
| Q |
236 |
tgatgttgctggtggtggatggcatggaggagagagaaaggtgatagtgggtggaaga |
293 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
14735560 |
tgatgttgctggtagtgggtggcatggatgagagagaaggatgatagtgggtggaaga |
14735503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 14735477 - 14735440
Alignment:
| Q |
288 |
ggaagaaaaaattcaaatgtgaagagactatcataaga |
325 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
14735477 |
ggaagaaaaaaatcaagtgtgaagagactatcataaga |
14735440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University