View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_high_9 (Length: 491)
Name: NF19467_high_9
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 45461711 - 45461254
Alignment:
| Q |
19 |
aataggcactaccactctcccttgcatcaattagttccaacagctccttcctcacagattctcccattttaggactactactagcaggaggcaacatgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461711 |
aataggcactaccactctcccttgcatcaattagttccaacagctccttcctcacagattctcccattttaggactactactagcaggaggcaacatgaa |
45461612 |
T |
|
| Q |
119 |
ccgtacnnnnnnncttttgttgcaagagctactactcgccaacaacgtatgatcattttcctcaattactgctgggctaatctgagcttcattagtaatg |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461611 |
ccgtactttttttcttttgttgcaagagctactactcgccaacaatgcatgatcattttcctcaattactgctgggctaatctgagcttcattagtaatg |
45461512 |
T |
|
| Q |
219 |
ctaacttcattgcatgtttcatcattcatcaaagggactaatgcatttccatctgatgaatttcccactatcatcattttttcttctgccgaaaccattg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461511 |
ctaacttcattgcatgtttcatcattcatcaaagggactaatgcatttccatctgatgaatttcccactatcatcattttttcttctgccgaaaccattg |
45461412 |
T |
|
| Q |
319 |
attcaatgtcactcatctgttcaatggaaatgaattctcctatagcaccaatgattttctcctcaaaatcactcgtgtcccttatattattatcacaata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461411 |
attcaatgtcactcatctgttcaatggaaatgaattctcctatagcaccgatgattttctcctcaaaatcactcgtgtcccttatattattatcacaata |
45461312 |
T |
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| Q |
419 |
tccatatctcacaatgcaacgatatattttataatattttggcccaatccttcctatg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461311 |
tccatatctcacaatgcaacgatatattttataatattttggcccaatccttcctatg |
45461254 |
T |
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