View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19467_low_1 (Length: 652)
Name: NF19467_low_1
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_1 |
 | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Complemental strand, 3700659 - 3700038
Alignment:
| Q |
18 |
tttcgtgcagtgttggcaaatgtgacaacaaagacattgccatggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700659 |
tttcgtgcagtgttggcaaatgtgacaacaaagacattgccatggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaa |
3700560 |
T |
|
| Q |
118 |
tgcttgggttgccattaaatcaacaatcaatgctaccggcggcgtggttgaagttgaacatagtaaactccccaacgagttgtggatggatggcaatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3700559 |
tgcttgggttgccattaaatcaacaatcaatgctaccggcggcgtggttgaagttgaacatagtaaactccccaacgagttgtggatggatggcaatgat |
3700460 |
T |
|
| Q |
218 |
tgagaaactgcaagtagcaataacaaagaaggatcttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3700459 |
tgagaaactgcaagtagcaataacaaagaaggatcttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagag |
3700360 |
T |
|
| Q |
318 |
attcaagtaatttgagggtggtagggataggtgcatcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataa |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3700359 |
attcaagtaatttgagggtggcagggataggtgcatcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataa |
3700260 |
T |
|
| Q |
418 |
ctcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagtaattgatcagttatggctattta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3700259 |
ctcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagtaattgatcagttatggctattta |
3700160 |
T |
|
| Q |
518 |
tataaagaaatatcttacttttaaaaccaagtttgaga-tttgagttggaggagtgctaataaaacactcttttcaaacacactctttaattggcggaaa |
616 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3700159 |
tataaagaaatat-ttacttttaaaatcaagtttgagattttgagttggaggagtgctgataaaacactcttttcaaacacactctttaattgcgagaaa |
3700061 |
T |
|
| Q |
617 |
tttagttggatcccaccaaatca |
639 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
3700060 |
ttcagttggatcccaccaaatca |
3700038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 258 - 491
Target Start/End: Original strand, 3771095 - 3771328
Alignment:
| Q |
258 |
gtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaat |
357 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
3771095 |
gtggtaagtcttgtttgttaattggagggaggaaagtgcagtttatggatgaaggaagagattcaagtaatttgagggtggcagggattggtgcatcaat |
3771194 |
T |
|
| Q |
358 |
agtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaa |
457 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||| || || ||||||||| |||||||| | |||| |
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|
| T |
3771195 |
agtggagaagatgcaagtgatatgaatgtggtgatggagatgaattagtctcttgcagaactcaataatagaactttggtggctaaatagaggaattgaa |
3771294 |
T |
|
| Q |
458 |
attactgctatatgagttgttttagccattgaat |
491 |
Q |
| |
|
| |||||||||||||||| ||||||||| |||| |
|
|
| T |
3771295 |
actactgctatatgagttcctttagccatagaat |
3771328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 280 - 491
Target Start/End: Complemental strand, 3707078 - 3706867
Alignment:
| Q |
280 |
tggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaatagtggggaagatgcaagtgata |
379 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
3707078 |
tggagggaggaaactgcagcttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgaca |
3706979 |
T |
|
| Q |
380 |
tgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttt |
479 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||| |||||||| || || ||| ||||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
3706978 |
tgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaactttgatggctaaatagagggattgaaactactgctatatgagttgttt |
3706879 |
T |
|
| Q |
480 |
tagccattgaat |
491 |
Q |
| |
|
||||||| |||| |
|
|
| T |
3706878 |
tagccatggaat |
3706867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 265 - 486
Target Start/End: Original strand, 3778763 - 3778984
Alignment:
| Q |
265 |
gtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaatagtgggg |
364 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
3778763 |
gtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtgggg |
3778862 |
T |
|
| Q |
365 |
aagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactg |
464 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||| || || ||||||||| || | ||| | |||| ||||| |
|
|
| T |
3778863 |
aagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaactttggtggctaaacacaggaattgaagttacta |
3778962 |
T |
|
| Q |
465 |
ctatatgagttgttttagccat |
486 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3778963 |
ctatatgagttgttttagccat |
3778984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 257 - 486
Target Start/End: Complemental strand, 3718610 - 3718381
Alignment:
| Q |
257 |
tgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaa |
356 |
Q |
| |
|
||||||| ||||||| |||| | |||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
3718610 |
tgtggtaagtcttgtttgtttattggagggaggaaagtgcattttatggatgacggaagagactcaagtaatttgagggtggcagggattggtgcatcaa |
3718511 |
T |
|
| Q |
357 |
tagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactga |
456 |
Q |
| |
|
| ||||||||||||||||||| |||||||| | |||||||||||| | ||||||||| |||||||| || || ||||||||| |||||||| | ||| |
|
|
| T |
3718510 |
tggtggggaagatgcaagtgacatgaatgtggtgatggagatgaattaatctcttgcaaaactcaataatagaactttggtggctaaatagaggaattga |
3718411 |
T |
|
| Q |
457 |
aattactgctatatgagttgttttagccat |
486 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |
|
|
| T |
3718410 |
aactactgctatatgagttcctttagccat |
3718381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 252 - 472
Target Start/End: Original strand, 33005977 - 33006197
Alignment:
| Q |
252 |
cttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgc |
351 |
Q |
| |
|
|||| ||||||||||||||| | || | |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33005977 |
cttcttgtggtaggtcttgtttttttattggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggtgc |
33006076 |
T |
|
| Q |
352 |
atcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagaggg |
451 |
Q |
| |
|
|||||| |||||||||||||||||||| || | || ||||||| ||||||||||||||||| |||||||||| || |||| ||||| || |||||| |
|
|
| T |
33006077 |
atcaatggtggggaagatgcaagtgatttggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagaggg |
33006176 |
T |
|
| Q |
452 |
actgaaattactgctatatga |
472 |
Q |
| |
|
| ||| ||||| |||||||| |
|
|
| T |
33006177 |
attgatgttactactatatga |
33006197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 3778558 - 3778621
Alignment:
| Q |
57 |
ccatggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgc |
120 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3778558 |
ccatggcagaaagtgggaagtatacgaaagataagaggtttaagtcttttgctatttctaatgc |
3778621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 3718806 - 3718741
Alignment:
| Q |
58 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttg |
123 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
3718806 |
catggcagaaagtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttg |
3718741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 33005789 - 33005918
Alignment:
| Q |
58 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttgggttgccattaaatcaacaatcaatgctaccggc |
157 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||| | |||||||| | |||||| | |
|
|
| T |
33005789 |
catggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaacc |
33005888 |
T |
|
| Q |
158 |
ggcgtggttgaagttgaacatagtaaactc |
187 |
Q |
| |
|
|| ||||||||||||||||| || |||||| |
|
|
| T |
33005889 |
ggtgtggttgaagttgaacaaagcaaactc |
33005918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 3770898 - 3770963
Alignment:
| Q |
58 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttg |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
3770898 |
catggcagaaagtggaaagtatacaaaagataagatgttctagtcttttgctatttctaatgcttg |
3770963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 3707297 - 3707232
Alignment:
| Q |
58 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttg |
123 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
3707297 |
catggcagaaagtgggaaatatacaaaagataagaggttcaagtctttagctatttctaatgcttg |
3707232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 500
Target Start/End: Original strand, 12665 - 12769
Alignment:
| Q |
396 |
gatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagta |
495 |
Q |
| |
|
||||||||||| ||||||| || || || ||||| | ||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||| |||| | | |
|
|
| T |
12665 |
gatgaatgagtttcttgcaaaattctatgatggaagcttggtggctgaatgctgggattgaaattgctgctatatgaattgttttggccatggaattgga |
12764 |
T |
|
| Q |
496 |
attga |
500 |
Q |
| |
|
||||| |
|
|
| T |
12765 |
attga |
12769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 500
Target Start/End: Complemental strand, 60179 - 60075
Alignment:
| Q |
396 |
gatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagta |
495 |
Q |
| |
|
||||||||||| ||||||| || || || ||||| | ||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||| |||| | | |
|
|
| T |
60179 |
gatgaatgagtttcttgcaaaattctatgatggaagcttggtggctgaatgctgggattgaaattgctgctatatgaattgttttggccatggaattgga |
60080 |
T |
|
| Q |
496 |
attga |
500 |
Q |
| |
|
||||| |
|
|
| T |
60079 |
attga |
60075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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