View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19467_low_10 (Length: 485)
Name: NF19467_low_10
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 39687461 - 39687913
Alignment:
| Q |
16 |
attgttgagttcaagcgtaagtgattagttaaaataaatttgctatatgttggatat----atatgtacaagaattgtgactcatacccaatgtcagctt |
111 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687461 |
attgttgagtt-aagtgtaagtgattagttaggataaatttgctatatgttggatatatatatatgtacaagaattgtgactcatacccaatgtcagctt |
39687559 |
T |
|
| Q |
112 |
catggtttgtggtagagagttagtggcatgatctcttggtgatcttggatcattaacatgttaaatcacactctgcatcaatgtcaaccaatgctcgtgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
39687560 |
catggtttgtggtagagagttagtggcatgatctcttggtgatcttggatcattaacatgttaaatcacattttgcatcaatgtcaaccaatgcttgtgt |
39687659 |
T |
|
| Q |
212 |
tattctacatcttatataatcctgattgtataaacatatgatgacnnnnnnnnnnngacaaataaacacatgatgacttgaattttctataagttagaat |
311 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687660 |
tattcaacatcttatgtaatcctgattgtataaacacatgatgac-ttttttttttgacaaataaacacatgatgacttgaattttctataagttagaat |
39687758 |
T |
|
| Q |
312 |
tgattcttctattaaatttctcaaagacaaactttattgcagtagtttcgatatgtaaatcatggaccagatggatctcaagaaagagaaatgggtcacc |
411 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39687759 |
tgattcttctattaaatttctc-aagacaaactttattgcagtagtttccatatgtaaatcatggaccagatggatctcaagaaagagaaatgggtcacc |
39687857 |
T |
|
| Q |
412 |
atggatcacttaagtactagtatgtc-ttttctagtctaaacttttttgacaatgttgc |
469 |
Q |
| |
|
||||||||||| | || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39687858 |
atggatcactt---tgcttgtatgtctttttctagtctaaacttttttgacaatgttgc |
39687913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 24426754 - 24426801
Alignment:
| Q |
287 |
acttgaattttctataagttagaa-ttgattcttctattaaatttctc |
333 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
24426754 |
acttgtattttctataagttaaaaattgattcttctattaaatttctc |
24426801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University